genome.fa.s270.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold270
Parameters: 2 7 7 80 10 50 1000
Length:  409424

Tables:   1   2   3   4   

This is table  4  of  4  ( 465 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
300358--300424	2	33.5	2	100	0	134	49	0	0	50	1.00
306247--306301	17	3.4	17	75	25	64	56	1	0	41	1.10
306309--306358	20	2.5	19	74	6	55	50	8	10	32	1.65
307117--307147	3	10.3	3	100	0	62	67	0	32	0	0.91
308169--308212	22	2.0	23	86	4	63	34	0	0	65	0.93
308573--308633	26	2.3	27	77	5	70	47	0	0	52	1.00
308593--308629	17	2.3	17	86	9	51	40	0	0	59	0.97
309233--309279	21	2.1	23	88	7	71	53	0	12	34	1.39
310568--310632	17	4.1	17	70	22	59	60	1	1	36	1.16
310575--310641	30	2.2	29	82	12	82	59	1	2	35	1.22
311160--311210	21	2.4	21	78	15	61	60	0	0	39	0.97
311343--311385	21	2.0	21	90	0	68	27	2	2	67	1.15
312209--312234	2	13.0	2	100	0	52	50	0	0	50	1.00
312994--313054	17	3.4	17	66	16	50	57	11	1	29	1.44
317449--317484	2	18.5	2	94	5	65	47	0	0	52	1.00
317449--317482	17	2.0	17	100	0	68	47	0	0	52	1.00
318039--318065	2	13.5	2	100	0	54	48	0	0	51	1.00
318536--318613	25	3.0	27	76	14	90	46	10	16	26	1.79
318655--318695	22	1.9	22	90	5	66	58	7	4	29	1.46
319348--319376	2	14.5	2	100	0	58	48	0	0	51	1.00
319686--319822	51	2.7	51	88	0	202	43	11	15	29	1.82
319785--319858	20	3.7	19	80	8	85	44	12	12	31	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
321114--321155	12	3.6	12	78	15	52	35	0	0	64	0.94
321111--321156	22	2.0	22	88	12	67	39	0	0	60	0.97
322789--322818	14	2.1	14	100	0	60	36	0	13	50	1.42
322887--323229	170	2.0	169	91	0	560	32	10	11	45	1.75
324147--324197	25	2.0	25	81	7	59	39	1	0	58	1.09
325330--325366	17	2.1	19	85	10	51	54	0	5	40	1.24
327221--327313	33	2.8	33	75	6	98	48	6	6	38	1.55
327954--327996	21	2.0	21	100	0	86	23	0	13	62	1.31
329683--329733	22	2.4	21	84	15	70	41	0	0	58	0.98
331828--331864	2	18.5	2	100	0	74	48	0	0	51	1.00
332694--332724	12	2.7	12	95	5	55	45	0	0	54	0.99
335664--335751	16	5.5	16	70	8	54	42	22	14	20	1.89
335641--335733	48	1.9	48	84	4	125	38	22	15	23	1.92
336742--336852	53	2.1	53	79	3	116	39	27	13	18	1.89
337161--337231	24	3.0	24	76	13	67	61	1	0	36	1.05
337817--337842	3	8.7	3	100	0	52	30	0	0	69	0.89
338402--338454	19	2.9	18	73	15	54	52	3	1	41	1.30
339106--339315	50	4.2	50	95	0	375	30	20	21	27	1.98
343718--343901	50	3.7	50	82	0	188	34	20	13	30	1.91
343720--343901	100	1.8	100	81	0	229	35	20	13	30	1.91
343832--343930	50	2.0	50	93	0	171	50	18	3	28	1.61
343716--343925	100	2.1	100	76	0	213	39	19	11	30	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
344463--344493	2	15.5	2	100	0	62	51	0	0	48	1.00
345027--345064	20	2.0	20	89	5	60	42	0	0	57	0.98
345020--345068	18	2.7	18	82	17	66	42	0	0	57	0.99
345106--345142	15	2.5	15	87	12	58	43	5	0	51	1.24
345618--345658	2	20.5	2	84	0	55	0	46	4	48	1.23
345625--345658	14	2.4	14	100	0	68	0	44	5	50	1.26
348399--348558	33	4.7	33	77	3	122	29	16	18	35	1.94
350715--350758	20	2.2	20	88	8	63	56	4	0	38	1.20
350843--350877	2	17.5	2	100	0	70	48	0	0	51	1.00
356768--356825	28	2.1	28	100	0	116	13	20	20	44	1.85
360117--360157	21	2.0	21	85	9	57	26	17	4	51	1.65
360151--360208	21	2.8	21	86	0	71	20	20	0	58	1.39
366930--366985	24	2.3	23	80	14	60	62	0	1	35	1.06
367157--367207	16	3.2	16	72	10	50	23	5	13	56	1.59
369703--369737	18	1.9	18	88	0	52	14	14	31	40	1.86
374032--374089	30	1.9	30	82	0	71	43	1	0	55	1.10
374534--374567	13	2.5	13	95	4	59	38	0	14	47	1.45
375370--375399	15	1.9	16	93	6	53	56	0	0	43	0.99
375678--375712	8	4.4	8	92	0	52	37	0	11	51	1.38
375690--375735	4	11.5	4	85	0	56	47	6	2	43	1.41
375691--375735	12	3.8	12	87	0	63	48	6	2	42	1.41
375751--375783	12	2.8	12	90	0	57	30	0	18	51	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
376203--376229	2	13.5	2	100	0	54	51	0	0	48	1.00
376847--376883	3	12.3	3	100	0	74	32	0	0	67	0.91
377067--377147	39	2.1	38	82	11	94	53	0	6	40	1.26
378357--378389	16	2.0	17	88	5	50	33	0	6	60	1.21
379498--379541	22	2.0	23	86	8	65	36	0	0	63	0.95
380800--380830	10	3.0	10	90	9	53	29	0	0	70	0.87
380800--380831	11	3.0	11	95	4	57	28	0	0	71	0.86
381208--381271	28	2.3	28	81	5	76	59	7	1	31	1.35
381589--381635	23	2.0	25	84	12	64	57	0	0	42	0.98
382074--382122	3	16.3	3	100	0	98	65	0	0	34	0.93
382719--382781	19	3.1	21	82	13	78	61	0	0	38	0.96
382733--382796	19	2.9	23	84	13	73	62	0	0	37	0.95
382820--382859	16	2.5	16	87	0	62	55	0	0	45	0.99
383717--383766	23	2.3	23	82	6	68	26	2	2	70	1.09
384007--384050	22	2.0	22	90	0	70	52	6	2	38	1.41
386287--386314	5	5.6	5	100	0	56	60	0	0	39	0.97
386672--386738	24	2.7	24	80	13	73	31	1	1	65	1.10
387474--387729	50	5.1	50	87	0	368	32	18	19	29	1.96
392105--392336	50	4.7	50	84	5	272	34	19	18	28	1.95
392118--392355	99	2.4	100	84	4	286	34	18	18	27	1.95
392504--392539	2	18.0	2	100	0	72	50	0	0	50	1.00
393488--393540	18	2.8	19	80	11	65	37	3	1	56	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
393595--393647	28	1.9	27	84	3	70	26	0	5	67	1.12
393608--393662	17	3.3	17	72	12	51	23	0	3	72	1.00
396342--396383	22	1.9	23	85	9	61	59	0	4	35	1.19
397535--397585	13	4.0	13	79	2	50	64	0	1	33	1.05
398187--398231	22	2.0	22	83	8	56	51	0	0	48	1.00
402656--402693	2	19.0	2	100	0	76	50	0	0	50	1.00
402743--402770	2	14.0	2	100	0	56	50	0	0	50	1.00
402843--402960	18	6.2	19	75	15	109	50	0	2	46	1.14
402843--402960	37	3.1	36	77	15	121	50	0	2	46	1.14
402847--402970	60	2.1	60	92	4	207	50	0	3	45	1.17
403171--403229	18	3.4	18	71	17	52	71	0	0	28	0.87
404486--404640	41	3.7	41	70	14	111	56	0	0	41	1.08
404778--404833	29	1.9	29	100	0	112	55	1	3	39	1.28
405664--405702	3	13.3	3	94	5	71	33	35	30	0	1.58
406616--406647	2	16.0	2	100	0	64	50	0	0	50	1.00
406664--406690	4	6.8	4	100	0	54	22	0	0	77	0.76
408746--408851	53	2.0	53	96	0	194	31	16	15	37	1.89

Tables:   1   2   3   4

The End!