genome.fa.s271.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold271
Parameters: 2 7 7 80 10 50 1000
Length:  492225

Tables:   1   2   3   4   

This is table  3  of  4  ( 406 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
287333--287388	20	3.1	18	76	7	51	53	0	1	44	1.11
287598--287628	15	2.1	15	93	0	53	35	0	9	54	1.33
290515--290561	25	2.0	23	84	12	60	38	0	2	59	1.09
290916--290953	11	3.5	11	85	7	51	47	2	5	44	1.39
291215--291272	26	2.3	25	82	5	71	36	12	8	43	1.73
291323--291368	19	2.3	21	88	7	69	36	0	0	63	0.95
292089--292137	15	3.2	16	85	5	57	48	0	2	48	1.12
292055--292149	37	2.6	34	74	18	93	52	2	4	41	1.32
292120--292160	22	1.9	21	85	5	55	56	4	2	36	1.34
292469--292548	31	2.5	32	72	13	76	47	2	3	46	1.34
292509--292572	16	4.0	16	81	6	76	50	1	3	45	1.27
294878--294912	18	1.9	18	88	11	54	60	2	0	37	1.12
295299--295343	22	2.0	22	83	8	56	44	0	2	53	1.13
302453--302497	22	2.0	23	86	4	65	35	2	0	62	1.08
302512--302578	34	2.0	33	88	11	102	47	0	0	52	1.00
302523--302614	18	5.4	17	69	21	68	43	0	0	56	0.99
302567--302608	21	2.0	22	85	4	59	35	0	0	64	0.94
305084--305133	16	3.1	16	73	18	50	50	4	0	46	1.20
305682--305718	18	2.1	18	89	0	56	43	2	2	51	1.30
306517--306548	16	2.0	16	93	0	55	46	0	0	53	1.00
306676--306710	17	2.1	16	89	5	52	77	5	0	17	0.96
306951--306977	6	4.5	6	100	0	54	14	55	14	14	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
311391--311442	20	2.5	20	81	12	52	36	3	1	57	1.28
313667--313704	2	19.0	2	100	0	76	50	0	0	50	1.00
315192--315240	20	2.3	22	79	10	57	57	4	0	38	1.18
316038--316083	20	2.3	20	82	10	58	67	6	0	26	1.15
316216--316243	6	4.7	6	100	0	56	85	0	14	0	0.59
316209--316243	18	1.9	18	88	0	52	80	5	14	0	0.89
316911--316951	16	2.5	16	88	11	57	51	0	0	48	1.00
321168--321215	2	24.0	2	100	0	96	50	0	0	50	1.00
326899--326932	2	17.0	2	100	0	68	50	0	0	50	1.00
327188--327214	13	2.1	13	100	0	54	25	14	7	51	1.68
330066--330116	2	25.5	2	100	0	102	49	0	0	50	1.00
341290--341365	40	1.9	40	88	0	116	43	25	3	27	1.72
342710--342772	30	2.1	30	100	0	126	38	17	19	25	1.93
343915--343939	6	4.2	6	100	0	50	48	0	16	36	1.46
343962--344209	128	1.9	128	95	0	442	35	17	9	37	1.82
345638--345690	12	4.8	12	72	25	53	49	1	0	49	1.12
345911--345949	20	2.0	21	90	10	64	48	0	5	46	1.24
346775--346828	19	2.8	19	72	8	56	35	3	1	59	1.26
346916--346965	22	2.2	22	85	3	64	42	6	2	50	1.38
348336--348376	21	2.0	20	85	4	55	60	0	0	39	0.96
349156--349223	3	23.7	3	85	11	90	32	1	0	66	1.01
352811--352839	2	14.5	2	100	0	58	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
353204--353228	13	1.9	13	100	0	50	56	4	0	40	1.18
353611--353655	18	2.5	19	86	10	60	53	0	0	46	1.00
356297--356389	37	2.5	37	76	11	91	49	4	1	45	1.29
363883--363961	35	2.2	36	80	10	92	54	0	1	44	1.08
364185--364231	25	1.9	26	87	12	73	51	0	2	46	1.13
364177--364234	23	2.4	25	78	18	70	51	0	3	44	1.18
364247--364300	25	2.2	25	83	12	67	61	0	3	35	1.14
364791--364816	3	8.7	3	100	0	52	65	0	0	34	0.93
364906--364969	23	2.8	22	73	21	60	39	0	1	59	1.07
364916--364972	22	2.5	23	77	5	62	42	0	0	57	0.98
365301--365343	5	8.4	5	85	14	61	41	0	0	58	0.98
365302--365349	15	3.2	15	85	8	62	39	0	0	60	0.97
365275--365374	36	2.8	35	77	14	91	43	0	0	57	0.99
365368--365455	21	4.4	22	76	19	70	50	0	0	50	1.00
365410--365455	17	2.5	18	86	13	67	52	0	0	47	1.00
365541--365569	4	7.2	4	100	0	58	75	0	0	24	0.80
365894--365992	15	6.9	15	69	18	59	40	0	0	59	0.97
365906--365976	12	6.1	12	81	4	56	45	0	0	54	0.99
365901--365991	47	2.0	46	91	6	148	40	0	0	59	0.97
366083--366122	12	3.3	12	83	13	55	45	0	0	55	0.99
366148--366206	30	2.0	29	93	3	100	55	0	1	42	1.09
366155--366272	30	3.9	30	76	7	96	61	0	0	36	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
366217--366256	20	2.0	20	90	9	64	65	0	0	35	0.93
366221--366269	20	2.4	21	76	10	57	71	2	0	26	0.97
367530--367592	27	2.3	28	76	15	69	25	4	3	66	1.26
367735--367759	13	1.9	13	100	0	50	52	0	0	48	1.00
369612--369644	16	2.1	16	88	11	50	36	12	24	27	1.91
370275--370320	14	3.4	14	81	3	58	30	21	8	39	1.84
370268--370333	28	2.3	29	79	7	82	37	21	9	31	1.85
377255--377287	16	1.9	18	88	11	52	51	3	3	42	1.32
377812--377853	2	21.0	2	95	0	75	47	0	2	50	1.14
378274--378310	5	7.4	5	96	0	56	24	18	56	0	1.41
381780--381817	19	2.1	18	85	14	51	52	0	2	44	1.14
383821--383851	16	1.9	16	100	0	62	51	6	6	35	1.53
383890--384243	190	1.9	190	84	2	487	42	12	5	38	1.66
385335--385378	17	2.6	18	85	7	56	45	0	0	54	0.99
392288--392321	18	2.0	16	88	11	50	44	2	0	52	1.16
392932--392969	11	3.5	11	82	17	53	0	2	7	89	0.57
392934--392969	10	3.5	10	88	3	54	0	2	5	91	0.49
393038--393081	21	2.1	21	86	0	61	36	15	6	40	1.74
395959--396003	22	2.2	20	88	8	63	42	0	2	55	1.12
396608--396651	17	2.6	18	85	7	56	45	0	0	54	0.99
396613--396656	18	2.5	17	85	7	52	43	0	2	54	1.12
398762--398813	27	1.9	27	84	0	68	48	11	0	40	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
398468--398844	188	2.0	190	84	4	503	41	11	6	39	1.68
399855--399908	27	2.0	26	83	16	67	42	0	0	57	0.98
400032--400089	21	2.6	23	78	13	66	29	5	3	62	1.33
400039--400088	21	2.4	22	86	6	68	30	4	4	62	1.32
400470--400508	19	2.1	18	85	4	51	82	0	0	17	0.68
400472--400508	12	2.9	12	92	8	56	81	0	0	18	0.70
402690--402754	32	2.1	31	82	2	76	46	6	1	46	1.37
402738--402790	16	3.1	16	72	15	52	49	1	1	47	1.23
403328--403372	7	6.3	7	82	5	54	44	0	0	55	0.99
407390--407426	19	1.9	19	88	0	56	51	5	0	43	1.24
419017--419085	21	3.2	21	72	2	66	40	2	10	46	1.53
419113--419155	22	2.0	21	82	13	52	46	6	4	41	1.51
419204--419247	15	3.0	15	90	3	72	45	2	11	40	1.53
421196--421276	6	15.4	5	74	16	51	55	1	2	40	1.21
421634--421701	30	2.4	28	86	13	88	52	0	1	45	1.09
421611--422007	131	3.1	128	76	17	367	53	1	2	42	1.22
421670--422047	131	2.9	127	85	9	523	52	1	2	42	1.25
422421--422865	92	4.7	94	82	7	467	41	7	16	35	1.76
422421--422872	184	2.4	187	83	7	529	41	7	16	34	1.75
422815--422930	58	2.0	58	86	3	162	37	9	16	36	1.81
422724--423011	146	1.9	149	83	4	368	38	8	17	36	1.79
422873--423120	92	2.7	91	83	7	265	42	6	16	34	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
422631--423110	238	2.0	240	82	5	596	41	7	16	35	1.76
425224--425380	44	3.5	44	90	4	253	28	0	17	54	1.44
425226--425295	22	3.2	22	67	15	63	30	0	11	58	1.33
425212--425380	89	1.9	89	91	2	277	27	0	17	54	1.43
425225--425411	89	2.1	88	84	5	234	27	1	17	53	1.53
426163--426212	24	2.0	25	96	3	93	44	8	12	36	1.71
426838--427631	165	4.8	165	85	4	980	29	9	9	52	1.64
426838--427631	332	2.4	329	85	5	1050	29	9	9	52	1.64
426797--427712	332	2.8	331	82	7	1011	28	9	9	51	1.66
427919--427968	5	9.2	5	87	12	64	24	0	2	74	0.93

Tables:   1   2   3   4