Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold271
Parameters: 2 7 7 80 10 50 1000
Length:  492225

Tables:   1   2   3   4   

This is table  4  of  4  ( 406 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
429632--430009
155
2.4
154
81
7
401
27
16
15
40
1.88
431749--431833
42
2.0
42
90
2
134
50
10
17
21
1.76
434165--434208
14
3.4
13
84
9
54
56
0
0
43
0.99
434164--434210
13
3.5
14
82
5
62
57
0
0
42
0.98
435319--435344
2
13.0
2
100
0
52
0
50
0
50
1.00
436676--436702
4
6.8
4
100
0
54
25
0
0
74
0.83
441243--441276
6
5.7
6
96
0
59
11
17
2
67
1.34
445171--445199
13
2.2
13
100
0
58
31
17
13
37
1.89
445187--445239
20
2.6
21
79
11
65
39
15
18
26
1.90
445291--445315
13
1.9
13
100
0
50
32
16
16
36
1.90
445271--445338
33
2.1
33
88
2
102
35
19
13
32
1.90
447614--447664
21
2.4
21
90
0
75
62
7
5
23
1.44
448036--448065
15
2.1
14
93
6
51
33
0
3
63
1.11
448148--448189
19
2.2
20
86
4
59
33
0
0
66
0.92
448514--448585
12
5.9
13
95
3
73
36
0
1
62
1.04
448527--448586
3
20.0
3
100
0
120
33
0
0
66
0.92
449794--449896
51
2.0
51
98
0
197
35
10
19
33
1.86
450704--450728
1
25.0
1
100
0
50
0
0
0
100
0.00
453322--453447
40
3.2
40
88
2
164
26
3
9
60
1.45
458207--458235
14
2.1
14
100
0
58
34
0
27
37
1.57
459026--459073
9
5.4
9
82
5
53
77
2
4
16
1.03
461704--461766
19
3.6
19
74
24
75
34
12
17
34
1.88
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
461702--461772
32
2.2
32
97
0
133
36
11
16
35
1.85
461723--461747
13
1.9
13
100
0
50
36
16
16
32
1.90
465650--465679
15
2.0
15
93
0
51
43
0
3
53
1.17
465654--465698
22
2.1
21
84
12
56
35
0
8
55
1.31
465742--465850
16
6.8
16
73
11
62
30
5
11
52
1.61
471764--471796
3
11.0
3
100
0
66
33
0
0
66
0.92
472083--472119
16
2.3
17
86
9
51
62
2
2
32
1.23
472687--472723
15
2.4
16
95
4
67
56
2
0
40
1.13
473611--473667
16
3.6
16
79
6
64
56
0
1
42
1.10
473732--473804
32
2.2
32
82
7
83
39
0
0
60
0.97
476545--476583
17
2.5
17
88
12
57
87
0
12
0
0.55
477169--477198
15
2.0
15
100
0
60
60
0
0
40
0.97
477225--477278
15
3.6
15
73
9
56
55
0
3
40
1.17
477232--477280
11
4.7
11
75
14
50
57
0
2
40
1.10
477224--477284
30
2.0
30
100
0
122
54
0
3
42
1.17
482530--482595
16
4.3
15
77
7
69
33
0
4
62
1.16
483188--483218
16
1.9
16
93
0
53
22
0
19
58
1.40
483249--483286
19
2.0
19
85
10
51
60
0
2
36
1.11
483640--483677
15
2.4
16
78
4
51
47
0
0
52
1.00
485225--485267
22
2.0
22
100
0
86
30
18
13
37
1.90
486368--486410
19
2.2
20
84
12
54
25
2
0
72
0.97
486417--486471
22
2.5
22
90
0
83
47
5
9
38
1.58
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
488217--488288
17
4.4
17
67
11
60
31
1
66
0
1.00
488220--488291
24
3.0
23
78
20
76
33
1
65
0
1.02

Tables:   1   2   3   4

The End!