genome.fa.s281.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold281
Parameters: 2 7 7 80 10 50 1000
Length:  622278

Tables:   1   2   3   4   

This is table  3  of  4  ( 455 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
309378--309402	13	1.9	13	100	0	50	36	16	16	32	1.90
309443--309509	33	2.0	33	88	0	98	40	14	11	32	1.83
309465--309489	13	1.9	13	100	0	50	32	16	16	36	1.90
311666--311691	13	2.0	13	100	0	52	38	15	15	30	1.88
311648--311711	33	2.0	33	87	3	94	42	17	14	26	1.87
315767--315797	15	2.1	15	93	0	53	48	16	22	12	1.80
317880--317917	13	2.9	13	96	0	67	34	18	15	31	1.92
320487--320512	13	2.0	13	100	0	52	38	15	15	30	1.88
320469--320532	32	2.0	33	87	3	94	40	17	14	28	1.88
322686--322777	20	4.8	20	77	8	75	32	14	14	39	1.85
322635--322827	51	3.7	51	70	8	152	29	16	12	41	1.85
322604--322740	71	1.9	71	83	2	177	30	16	12	40	1.85
322708--322758	17	2.8	17	85	8	57	35	13	17	33	1.89
322615--322827	108	1.9	110	87	2	313	30	15	13	40	1.86
331349--331553	79	2.6	78	87	5	277	31	15	26	26	1.95
331485--331606	51	2.4	51	84	0	145	30	13	27	28	1.95
333976--334001	13	2.0	13	100	0	52	38	15	15	30	1.88
334056--334115	21	2.9	21	87	7	79	35	13	11	40	1.81
337102--337157	21	2.7	21	88	0	85	33	10	19	35	1.87
337193--337260	19	3.9	19	78	21	85	35	11	14	38	1.83
337214--337238	13	1.9	13	100	0	50	36	16	16	32	1.90
337195--337257	32	2.0	32	96	0	117	34	12	15	36	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
337280--337342	33	1.9	33	86	0	90	25	14	15	44	1.84
339717--340086	202	1.8	202	87	2	546	30	27	11	30	1.91
342537--342609	20	3.6	20	81	3	101	35	13	19	31	1.91
342555--342630	21	3.7	21	78	7	93	40	11	18	28	1.86
342537--342630	41	2.3	41	96	3	172	38	12	19	29	1.89
342669--342694	13	2.0	13	100	0	52	38	15	15	30	1.88
346756--346786	15	2.1	15	93	0	53	48	16	22	12	1.80
348801--348879	20	3.7	21	75	15	72	26	13	15	44	1.84
348866--348904	13	3.0	13	96	0	69	30	17	15	35	1.91
351362--351434	20	3.6	20	81	3	101	35	13	19	31	1.91
351380--351455	21	3.7	21	78	7	93	40	11	18	28	1.86
351362--351455	41	2.3	41	96	3	172	38	12	19	29	1.89
351494--351519	13	2.0	13	100	0	52	38	15	15	30	1.88
354171--354236	11	6.0	11	77	12	73	84	13	1	0	0.68
354173--354236	12	5.4	12	81	7	69	85	12	1	0	0.66
354173--354236	23	2.8	23	86	11	87	85	12	1	0	0.66
355485--355793	28	10.8	28	87	4	422	28	33	17	20	1.95
355769--355818	25	2.0	25	92	0	82	32	28	20	20	1.97
355513--355845	56	5.9	55	84	8	158	29	32	17	21	1.95
355929--356060	48	2.8	48	88	0	183	19	25	18	36	1.94
356755--357074	20	14.2	20	70	21	147	28	16	13	41	1.86
356758--356893	71	1.9	70	89	4	211	29	15	12	42	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
356758--357074	91	3.5	91	80	8	362	28	16	13	41	1.86
356769--357024	111	2.3	111	89	2	399	29	15	13	41	1.86
366536--366626	20	4.6	19	83	5	92	30	16	14	38	1.88
366656--366707	20	2.6	20	90	6	79	34	13	21	30	1.92
370212--371106	65	13.6	66	76	6	627	41	18	23	17	1.90
370319--370956	32	19.5	33	65	16	143	41	19	22	16	1.90
370330--371005	66	10.3	65	78	5	483	41	18	22	16	1.90
370754--370857	33	3.2	32	72	12	93	41	22	24	12	1.88
370374--371030	199	3.4	195	80	6	715	42	18	22	17	1.89
370212--371106	133	6.8	130	78	7	605	41	18	23	17	1.90
372538--372869	88	3.8	88	85	2	434	43	12	18	25	1.86
372538--372869	176	1.9	175	89	1	513	43	12	18	25	1.86
372538--372856	44	7.3	44	66	16	171	43	11	19	25	1.85
373236--373335	51	2.0	50	84	5	130	28	19	22	31	1.97
373131--373443	162	1.9	163	85	3	434	33	15	17	33	1.91
376931--376970	21	1.9	21	94	0	71	50	2	5	42	1.37
377774--377822	20	2.5	20	89	0	71	42	6	16	34	1.73
383486--383521	15	2.4	15	95	0	63	63	5	2	27	1.30
385575--385628	12	4.5	11	78	15	54	5	11	1	81	0.93
385575--385628	24	2.2	24	83	6	65	5	11	1	81	0.93
385578--385628	18	3.1	16	81	13	50	5	11	1	80	0.97
390841--390913	20	3.7	20	78	14	96	41	16	16	26	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
390837--390912	40	1.9	40	100	0	152	42	15	17	25	1.88
391787--391816	15	1.9	16	93	6	53	20	0	0	80	0.72
393217--393732	166	3.1	162	81	6	484	49	8	11	30	1.68
393309--393763	163	2.8	164	80	7	426	50	8	10	30	1.66
395129--395258	43	3.0	43	64	12	106	32	15	29	23	1.95
394921--395441	85	6.1	83	73	8	282	34	13	31	20	1.91
395105--395439	170	2.0	170	79	8	360	34	12	31	21	1.91
396571--396600	16	1.9	15	93	6	51	40	20	16	23	1.91
397335--397393	12	4.8	12	74	17	50	6	16	3	72	1.20
403536--403591	20	2.8	20	88	0	85	35	12	10	41	1.78
404521--404561	21	1.9	22	90	5	66	21	17	17	43	1.87
405293--405326	10	3.2	10	88	12	50	29	20	0	50	1.49
406745--406798	20	2.7	20	94	0	90	37	20	12	29	1.90
406827--406914	19	4.9	19	76	17	89	37	14	15	31	1.89
406867--406925	13	5.1	13	75	23	60	40	13	15	30	1.86
406848--406944	32	3.0	32	90	1	149	40	14	15	29	1.87
414879--414909	13	2.4	13	88	0	53	35	12	16	35	1.87
414954--415009	19	2.9	19	91	2	85	35	17	16	30	1.92
414994--415020	13	2.1	13	100	0	54	40	14	14	29	1.86
415750--415795	21	2.1	22	88	11	69	52	13	19	15	1.75
416297--416720	166	2.6	166	82	4	532	52	6	11	29	1.63
417565--417590	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
418298--418341	21	2.1	21	83	8	54	25	31	4	38	1.76
420143--420181	13	3.0	13	92	0	69	38	15	12	33	1.85
424977--425101	52	2.4	52	95	0	223	28	17	18	36	1.94
424977--425121	52	2.8	51	89	4	211	29	17	18	34	1.94
425110--425134	13	1.9	13	100	0	50	36	16	16	32	1.90
425173--425242	33	2.1	33	89	0	104	40	14	11	34	1.82
425198--425222	13	1.9	13	100	0	50	32	16	16	36	1.90
425819--426205	169	2.3	171	81	6	426	35	15	26	22	1.94
426181--426249	22	3.2	22	62	25	56	30	17	26	26	1.97
426203--426270	21	3.2	21	62	25	52	27	17	27	26	1.98
426184--426254	24	3.2	24	61	19	62	28	19	25	26	1.99
426115--427131	49	21.8	47	80	11	1064	31	17	24	25	1.97
426158--427131	92	10.5	89	86	9	1042	31	17	24	25	1.97
426110--427131	141	7.3	137	82	9	1176	31	17	24	25	1.97
427152--427229	33	2.5	28	86	14	75	28	11	35	24	1.90
427164--427736	34	18.1	34	77	18	454	31	12	35	20	1.90
427169--427727	61	8.8	68	81	12	361	29	13	35	21	1.91
427152--427727	95	6.1	95	78	15	535	29	12	35	21	1.91
427367--427660	27	9.9	27	75	18	248	28	13	36	21	1.92
427328--427698	61	6.1	61	88	6	540	30	13	36	20	1.91
427631--427725	35	2.7	35	87	6	131	32	12	36	17	1.88
427708--427881	31	5.7	30	83	9	156	27	18	29	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
427707--427881	62	2.8	61	85	6	212	26	18	29	25	1.98
427738--427881	31	4.6	31	87	7	195	26	18	29	25	1.98
429106--429144	14	2.7	14	92	4	60	0	0	12	87	0.55
429106--429141	12	2.9	12	91	4	54	0	0	11	88	0.50
429106--429159	14	3.6	14	82	9	54	1	5	9	83	0.88
436075--436199	52	2.4	52	95	0	223	28	17	18	36	1.94
436075--436219	52	2.8	51	89	4	211	29	17	18	34	1.94
436208--436232	13	1.9	13	100	0	50	36	16	16	32	1.90
436271--436340	33	2.1	33	89	0	104	40	14	11	34	1.82
436296--436320	13	1.9	13	100	0	50	32	16	16	36	1.90

Tables:   1   2   3   4