genome.fa.s281.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold281
Parameters: 2 7 7 80 10 50 1000
Length:  622278

Tables:   1   2   3   4   

This is table  4  of  4  ( 455 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
436962--436992	15	2.1	15	93	0	53	12	22	16	48	1.80
441065--441090	13	2.0	13	100	0	52	30	15	15	38	1.88
443644--443682	13	3.0	13	92	0	69	38	15	12	33	1.85
445762--445792	15	2.1	15	93	0	53	12	22	16	48	1.80
447595--447639	21	2.1	21	84	8	56	20	20	4	55	1.60
449854--449879	13	2.0	13	100	0	52	30	15	15	38	1.88
453726--454167	221	2.0	221	95	0	803	41	11	17	28	1.85
456024--456121	19	5.8	19	73	26	112	33	12	17	36	1.87
456025--456119	32	3.0	32	96	0	181	33	12	17	35	1.88
456163--456187	13	1.9	13	100	0	50	32	16	16	36	1.90
459959--460093	51	2.6	51	81	4	164	33	12	25	28	1.92
460025--460211	79	2.4	79	83	3	245	35	13	23	27	1.92
461758--461806	19	2.7	18	84	6	71	46	10	20	22	1.80
461877--461968	15	5.8	15	70	21	55	17	0	7	75	1.03
462624--462706	43	1.9	43	85	4	114	28	19	25	26	1.98
462660--463174	52	9.9	51	76	5	338	33	17	24	24	1.96
462678--463170	156	3.2	155	79	3	402	33	17	24	24	1.96
462660--463102	104	4.3	104	79	2	372	33	17	25	24	1.96
463207--463379	32	5.5	31	81	9	93	24	17	30	27	1.97
463231--463446	32	6.8	31	83	8	256	24	16	30	29	1.96
463231--463435	64	3.2	64	90	2	306	22	17	30	29	1.96
463231--463446	96	2.3	95	85	5	283	24	16	30	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
463700--463860	32	4.8	32	81	11	164	37	11	30	20	1.89
463674--463829	59	2.5	63	83	8	185	35	11	31	21	1.89
463830--464086	63	4.0	63	86	8	317	32	15	29	22	1.95
463834--464088	32	8.1	32	86	6	335	32	15	29	22	1.95
463834--464081	95	2.6	95	91	1	385	31	16	29	22	1.95
465342--465403	18	3.4	18	74	12	56	3	3	8	85	0.81
465341--465404	16	3.8	17	76	10	51	4	3	9	82	0.91
465345--465407	24	2.7	24	87	2	74	4	4	7	82	0.94
465344--465407	23	2.7	24	87	4	76	4	4	7	82	0.93
465359--465407	23	2.1	23	96	3	89	4	4	8	83	0.89
465370--465419	23	2.2	23	81	0	55	8	10	6	76	1.17
470175--470273	51	1.9	52	83	4	128	34	9	25	31	1.87
470256--470323	28	2.5	28	95	2	120	33	10	26	29	1.89
470532--470709	92	1.9	92	82	9	225	16	28	14	40	1.88
472421--472488	26	2.6	27	88	2	93	41	2	4	51	1.37
477130--477172	4	10.8	4	79	0	50	48	25	0	25	1.51
479842--479872	16	1.9	16	93	0	53	67	12	12	6	1.40
480371--480427	30	2.0	29	87	12	84	36	7	14	42	1.72
482539--482853	109	2.9	110	81	4	377	32	19	14	33	1.92
483644--483712	11	6.2	11	76	14	61	0	21	0	78	0.76
483646--483714	18	4.1	17	78	15	72	0	23	0	76	0.78
483645--483714	35	2.0	34	88	2	104	0	22	0	77	0.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
492312--492656	166	2.1	162	82	5	424	31	9	14	44	1.77
499793--499910	60	2.0	60	94	3	211	28	18	11	40	1.86
506913--508250	28	45.4	28	79	7	853	22	17	29	30	1.97
507410--508157	32	24.4	32	83	5	763	20	18	29	31	1.96
506930--508186	156	8.5	154	82	6	936	22	17	29	30	1.97
507295--508129	188	4.6	186	83	6	896	20	18	29	31	1.96
508184--508273	28	3.3	26	85	6	99	30	13	33	23	1.93
509527--509598	23	3.2	22	71	15	67	9	9	9	70	1.33
512093--512186	47	2.0	47	89	0	143	28	12	19	39	1.88
515723--515780	22	2.6	22	86	2	80	44	12	15	27	1.82
516878--517046	79	2.1	79	86	0	230	32	14	24	28	1.94
517005--517076	28	2.6	28	95	0	126	26	22	30	20	1.98
517030--517355	79	4.1	79	87	0	474	31	14	26	26	1.95
536055--536584	87	6.1	86	86	5	587	19	23	16	41	1.90
536054--536553	131	3.8	131	82	6	611	19	23	16	40	1.91
536669--536901	43	5.4	42	69	12	125	18	31	14	36	1.91
536673--536895	85	2.6	86	82	5	238	18	31	14	34	1.91
547222--547319	33	3.0	32	86	5	135	34	14	17	33	1.90
547221--547280	20	3.4	19	68	29	51	30	15	18	36	1.91
548138--548651	160	3.1	166	81	7	561	28	12	7	50	1.67
550117--550407	162	1.8	161	86	3	424	35	11	11	41	1.78
555451--555612	20	7.6	20	69	19	103	40	11	16	32	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
555398--555663	91	2.9	91	84	5	351	41	12	16	29	1.85
555488--555674	51	3.9	50	73	16	171	41	11	17	29	1.85
556314--556493	48	3.8	48	93	0	252	36	17	26	20	1.94
556630--557144	28	17.8	28	79	11	427	21	16	30	30	1.96
572353--572477	20	5.7	20	74	18	115	41	12	16	29	1.85
572353--572619	51	5.7	49	68	18	174	41	13	14	29	1.84
572353--572639	91	3.2	90	86	2	378	42	13	14	29	1.84
572518--572568	20	2.5	20	90	0	75	33	17	9	39	1.83
572512--572650	71	2.0	71	86	0	197	40	12	15	31	1.85
572585--572639	20	2.8	20	88	0	83	40	10	14	34	1.81
576839--576889	20	2.5	20	93	0	84	37	13	15	33	1.87
576942--576966	13	1.9	13	100	0	50	32	16	16	36	1.90
576922--576989	33	2.1	33	88	2	102	35	16	16	32	1.91
579822--579873	26	2.0	27	88	3	79	46	0	0	53	1.00
581278--581327	16	3.0	16	76	5	55	52	0	0	48	1.00
581557--581640	41	2.0	41	97	0	159	29	20	9	40	1.84
587233--587317	33	2.6	33	84	5	118	35	18	12	32	1.89
587237--587297	13	5.2	12	72	21	58	36	18	11	34	1.86
589832--589907	33	2.3	33	95	0	134	39	9	15	35	1.80
596062--596092	13	2.4	13	94	0	53	35	12	16	35	1.87
598187--598259	20	3.7	20	77	14	80	52	12	9	26	1.69
607692--607717	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
607808--607832	13	1.9	13	100	0	50	36	16	16	32	1.90
607790--607855	33	2.0	33	93	0	114	36	18	16	28	1.93
608473--608550	26	3.0	26	98	1	149	24	33	0	42	1.55
610325--610363	13	3.0	13	84	0	51	35	15	15	33	1.89
616645--616710	33	2.0	33	90	0	105	36	16	16	30	1.91
621272--621315	20	2.1	22	91	8	74	29	9	20	40	1.83
621349--621400	19	2.7	20	78	6	61	26	13	19	40	1.88

Tables:   1   2   3   4

The End!