genome.fa.s290.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold290
Parameters: 2 7 7 80 10 50 1000
Length:  591627

Tables:   1   2   3   4   

This is table  3  of  4  ( 441 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
340664--340725	31	2.0	31	83	0	79	30	27	9	32	1.89
340695--341128	52	8.4	52	78	4	324	26	26	16	31	1.96
340570--340814	135	1.8	135	84	1	339	26	26	13	33	1.94
343336--343384	22	2.2	22	85	3	62	24	18	6	51	1.69
347620--347663	22	2.0	22	82	8	54	36	6	13	43	1.71
347744--347796	20	2.6	21	85	14	76	41	18	11	28	1.85
347689--347908	112	2.0	112	87	0	323	38	18	13	30	1.88
348519--348556	20	1.9	20	100	0	76	21	13	5	60	1.52
349348--349827	158	3.0	156	71	8	387	32	20	12	35	1.90
349382--350188	157	5.1	158	71	8	435	31	20	12	35	1.90
349726--350526	159	5.1	155	69	10	420	31	18	13	35	1.90
349674--350688	308	3.3	308	82	4	1079	31	18	13	36	1.89
352166--352235	29	2.5	28	81	11	90	12	22	5	58	1.56
362450--362871	52	7.8	52	72	10	263	37	13	23	25	1.92
362456--362871	113	3.8	110	81	5	425	37	13	23	25	1.92
362511--362722	61	3.6	60	73	11	224	34	12	26	25	1.92
362923--363202	32	9.0	32	75	11	142	20	19	31	28	1.97
362939--363661	57	12.4	60	78	8	263	21	19	29	29	1.97
363111--363664	28	19.5	28	82	3	518	21	18	30	28	1.97
363111--363669	57	9.8	56	81	6	506	22	18	30	28	1.97
364902--364946	16	2.9	15	80	9	54	4	8	2	84	0.84
367308--367540	79	2.9	77	78	7	236	31	14	27	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
367495--367571	28	2.8	28	85	0	91	22	19	35	23	1.96
367578--367676	51	1.9	52	89	2	155	33	11	25	30	1.90
367554--367679	51	2.5	50	78	8	146	30	11	26	30	1.91
368899--369063	35	4.9	35	85	8	243	18	30	5	46	1.71
368899--369063	65	2.5	67	91	5	255	18	30	5	46	1.71
369683--369803	42	2.9	40	76	12	111	38	12	29	19	1.89
369787--370098	59	5.3	59	90	5	463	28	21	24	25	1.99
370118--370312	58	3.3	59	85	7	258	24	21	27	26	1.99
369909--370521	214	2.9	213	89	4	940	27	20	26	24	1.99
370175--370312	59	2.5	55	86	8	181	24	21	28	26	1.99
370181--370764	155	3.7	152	78	12	613	25	20	28	25	1.99
370333--370638	54	5.4	55	79	11	287	24	21	27	26	1.99
370333--371247	116	8.2	112	70	17	453	25	20	27	26	1.99
370333--371251	170	5.5	167	77	13	935	25	20	27	26	1.99
370396--371251	55	15.4	55	73	15	633	25	20	27	26	1.99
370333--371024	383	1.8	384	91	2	1167	25	19	28	26	1.99
377312--377497	79	2.3	77	76	8	194	36	11	24	28	1.90
377344--377545	79	2.6	77	79	7	199	30	15	28	25	1.96
377580--378048	52	8.9	53	77	10	376	33	12	25	28	1.92
377580--377845	105	2.5	103	85	3	361	36	11	23	28	1.89
377580--377845	53	5.1	51	90	2	343	36	11	23	28	1.89
377580--378050	51	9.0	51	77	8	353	33	12	25	29	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
379271--379435	35	4.9	35	85	8	243	18	30	5	46	1.71
379271--379435	65	2.5	67	91	5	255	18	30	5	46	1.71
382736--382782	24	1.9	25	86	4	69	53	14	19	12	1.73
386363--386404	20	2.1	20	82	8	50	30	14	16	38	1.89
389495--389562	20	3.5	20	82	8	77	44	13	11	30	1.79
390456--390531	20	3.8	20	77	6	82	36	11	13	38	1.81
390678--390787	39	2.9	37	82	5	123	56	13	5	24	1.58
392992--393031	9	4.4	9	90	0	53	45	0	30	25	1.54
392998--393028	3	10.3	3	92	0	53	38	0	32	29	1.57
401472--401508	13	2.6	14	87	12	58	2	5	5	86	0.78
405655--405720	19	3.8	19	77	22	90	33	12	18	36	1.88
405656--405718	32	2.0	32	100	0	126	33	12	19	34	1.89
405675--405699	13	1.9	13	100	0	50	36	16	16	32	1.90
405758--405785	13	2.2	13	100	0	56	32	17	14	35	1.90
405741--405806	33	2.0	33	88	5	98	28	18	13	39	1.89
410506--410555	25	1.9	25	84	8	64	4	16	12	68	1.35
411390--411429	15	2.6	15	84	4	53	17	0	2	80	0.83
411385--411438	23	2.4	21	82	14	63	18	0	3	77	0.91
411414--411456	23	2.0	22	81	9	52	23	0	6	69	1.12
411442--411480	19	2.1	19	85	9	53	17	0	5	76	0.96
413064--413097	15	2.3	15	95	5	61	23	2	0	73	0.97
413570--413659	25	3.6	25	85	5	110	41	17	31	10	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
415476--416817	157	8.8	157	71	14	767	23	18	20	37	1.94
415980--416822	157	5.4	155	83	5	902	22	18	21	37	1.94
415980--416817	314	2.7	306	83	5	1006	22	17	21	37	1.94
424493--424525	14	2.4	14	90	10	50	54	0	0	45	0.99
424615--424659	20	2.3	19	80	7	54	42	0	0	57	0.98
428743--428772	2	15.0	2	92	0	51	0	46	0	53	1.00
433485--433552	20	3.8	20	74	25	87	36	11	17	33	1.86
433505--433569	13	5.5	13	71	26	63	38	12	16	32	1.86
433485--433564	33	2.4	33	100	0	160	37	12	17	32	1.87
434174--434203	14	2.1	14	93	0	51	10	26	0	63	1.26
439819--439845	13	2.1	13	100	0	54	29	14	14	40	1.86
439915--439939	13	1.9	13	100	0	50	36	16	16	32	1.90
439895--439959	33	2.0	33	85	11	89	36	15	16	30	1.90
440759--440845	43	2.0	43	97	0	165	36	17	18	27	1.93
442719--442777	19	3.0	19	85	5	73	42	22	11	23	1.86
444976--445031	21	2.6	22	75	13	64	55	7	14	23	1.63
448848--448927	20	3.8	20	75	15	79	27	13	15	43	1.84
448913--448938	13	2.0	13	100	0	52	30	15	15	38	1.88
449059--449104	21	2.2	20	81	11	58	32	19	4	43	1.71
449378--449420	20	2.1	20	82	4	50	20	44	25	9	1.81
451167--451225	19	3.0	19	85	5	73	42	22	11	23	1.86
451260--451298	20	1.9	21	89	5	62	46	10	7	35	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
453401--453426	13	2.0	13	100	0	52	30	15	15	38	1.88
453408--453444	19	2.1	18	90	10	58	35	16	16	32	1.91
455501--455543	20	2.1	20	86	4	59	11	27	44	16	1.82
455984--456022	13	3.0	13	96	0	69	35	15	17	30	1.91
458102--458132	15	2.1	15	93	0	53	12	22	16	48	1.80
460552--460586	12	2.9	12	86	0	52	22	34	0	42	1.54
462046--462083	20	1.9	20	94	0	67	34	10	13	42	1.78
462139--462164	13	2.0	13	100	0	52	30	15	15	38	1.88
468199--468266	20	3.5	19	83	4	73	29	17	14	38	1.90
468181--468250	20	3.6	18	79	9	68	28	18	14	38	1.90
468300--468353	20	2.7	20	85	5	65	33	12	20	33	1.91
469983--470012	12	2.5	12	94	0	51	30	26	0	43	1.55
471656--471709	19	2.8	19	82	2	72	38	12	16	31	1.87
478823--478869	21	2.3	21	76	23	55	42	4	19	34	1.70
478990--479028	13	3.0	13	96	0	69	35	15	17	30	1.91
479014--479092	20	3.7	20	78	15	77	44	15	15	25	1.85
481097--481127	15	2.1	15	93	0	53	12	22	16	48	1.80
482931--482975	21	2.1	21	84	8	56	22	20	4	53	1.63
487510--487564	20	2.8	20	88	0	83	40	14	12	32	1.84
488949--488977	12	2.3	13	94	5	51	86	0	0	13	0.58
490853--490970	51	2.3	50	80	11	132	33	10	25	30	1.89
490900--491048	79	1.9	79	83	2	192	33	11	25	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
490982--491096	51	2.3	51	89	0	167	33	11	26	27	1.91
490852--491096	130	1.9	130	86	3	350	35	10	25	28	1.89
495264--495362	50	2.0	51	86	6	139	35	9	28	27	1.87
495312--495678	79	4.7	78	77	5	283	35	13	22	28	1.92
498868--499047	43	4.5	41	67	20	105	41	12	27	18	1.86
498724--498990	73	3.6	73	76	10	238	37	14	29	18	1.91
499114--499814	62	11.4	61	84	2	832	31	19	24	24	1.98
499048--499806	124	6.1	124	85	4	917	31	19	23	24	1.98
502493--502879	79	4.9	78	81	4	391	33	15	25	25	1.95
505241--505270	13	2.3	13	94	0	51	40	16	13	30	1.87

Tables:   1   2   3   4