genome.fa.s290.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold290
Parameters: 2 7 7 80 10 50 1000
Length:  591627

Tables:   1   2   3   4   

This is table  4  of  4  ( 441 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
505909--505983	35	2.2	35	88	7	109	40	10	25	24	1.87
505960--506370	45	9.3	44	76	9	353	41	13	26	19	1.88
505960--506370	134	3.1	132	84	6	503	41	13	26	19	1.88
505969--506248	88	3.2	88	80	7	327	45	12	25	17	1.83
506003--506370	134	2.8	133	87	3	510	41	13	26	19	1.88
506417--506611	46	4.3	45	70	14	150	37	12	29	20	1.89
506886--507088	45	4.6	45	78	9	227	38	13	28	19	1.89
506175--507430	239	5.3	239	86	1	1716	36	13	29	20	1.92
507132--507326	45	4.4	45	79	7	236	36	12	29	21	1.90
507266--507490	103	2.2	104	90	1	353	27	16	31	24	1.97
507412--508114	62	11.4	61	82	5	711	29	19	25	24	1.99
514304--514589	157	1.8	158	82	5	373	31	15	26	26	1.96
514250--514636	79	4.9	79	79	4	325	32	14	25	26	1.95
515138--515554	45	9.4	44	76	12	322	39	12	26	20	1.89
515182--516032	45	18.4	44	69	17	378	35	13	29	20	1.91
515139--515431	88	3.3	86	76	13	276	40	12	26	20	1.88
515140--515541	134	3.0	133	86	3	544	40	12	26	20	1.88
515356--516137	239	3.3	239	89	2	1162	34	14	30	20	1.93
515627--515791	88	1.9	88	82	9	212	35	13	31	20	1.91
515963--516182	103	2.1	103	86	5	300	30	16	30	22	1.96
516118--516446	62	5.4	62	81	5	346	27	17	27	27	1.98
516111--516456	185	1.9	185	86	5	502	28	17	27	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
516111--516449	123	2.7	123	82	4	400	28	17	27	26	1.97
516741--517108	45	8.3	45	75	8	299	39	11	27	20	1.87
516743--517062	89	3.6	89	79	13	283	40	10	28	20	1.86
516741--517097	134	2.7	133	87	3	520	40	11	28	20	1.86
517149--517300	44	3.5	44	76	8	139	37	15	27	19	1.92
517237--517614	105	3.6	105	89	3	568	29	17	30	21	1.96
517550--517747	45	4.4	45	75	12	201	36	13	28	21	1.91
517552--517670	46	2.6	46	86	5	163	36	12	31	20	1.90
517455--518329	239	3.7	238	87	3	1269	34	13	29	21	1.92
517820--517985	88	1.9	88	84	9	223	38	12	28	19	1.89
517796--518225	45	9.3	45	70	14	241	36	13	29	21	1.91
517455--518329	477	1.8	477	88	2	1355	34	13	29	21	1.92
518172--518375	104	2.0	105	92	1	338	31	16	30	21	1.95
518312--518579	62	4.4	62	86	3	355	27	19	27	25	1.99
521048--521073	13	2.0	13	100	0	52	30	15	15	38	1.88
521030--521091	31	2.0	32	90	3	99	27	16	16	40	1.89
523448--523494	21	2.3	21	76	23	55	42	4	19	34	1.70
523617--523679	13	4.8	13	94	0	108	36	15	17	30	1.91
523617--523678	26	2.4	26	100	0	124	35	16	17	30	1.92
523665--523743	20	3.7	20	78	15	77	44	15	15	25	1.85
525751--525788	15	2.5	15	91	0	58	13	21	15	50	1.78
527592--527636	21	2.1	21	84	8	56	22	20	4	53	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
529825--529850	13	2.0	13	100	0	52	30	15	15	38	1.88
530855--530905	27	2.0	26	81	11	61	23	41	15	19	1.90
531311--532066	391	1.9	391	81	2	901	33	17	16	32	1.93
535504--537151	828	2.0	828	98	0	3179	37	15	12	33	1.86
537644--537682	19	2.1	18	90	4	60	20	5	0	74	1.01
540013--540037	13	1.9	13	100	0	50	36	16	16	32	1.90
539992--540056	33	2.0	32	88	8	96	30	15	15	38	1.88
540022--540078	19	3.0	20	84	7	82	33	15	17	33	1.92
540180--540232	20	2.7	20	93	0	88	35	9	13	41	1.76
541750--541780	3	10.3	3	92	0	53	35	0	35	29	1.58
546311--546360	21	2.4	22	83	9	61	32	20	0	48	1.50
548686--548738	20	2.7	20	91	2	81	30	15	18	35	1.92
548788--548812	13	1.9	13	100	0	50	36	16	16	32	1.90
548768--548832	33	2.0	33	87	0	94	35	12	16	35	1.87
550337--550366	15	2.0	15	100	0	60	60	6	13	20	1.55
552140--552183	21	2.1	21	83	8	54	47	0	25	27	1.52
556518--556569	13	3.5	13	73	26	50	34	19	13	32	1.90
556526--556588	19	3.6	19	76	24	84	34	19	12	33	1.89
556518--556588	32	2.2	32	100	0	142	35	19	12	32	1.90
561818--561870	20	2.7	19	80	8	61	32	15	15	37	1.88
563008--563037	15	2.0	15	100	0	60	46	0	26	26	1.53
566831--566994	46	3.5	48	74	9	140	31	8	18	42	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
566831--567004	48	3.7	48	74	8	142	32	9	17	40	1.81
567309--567362	20	2.6	21	77	19	51	66	0	0	33	0.92
571621--571694	20	3.7	20	78	3	94	35	14	20	29	1.93
571639--571714	21	3.7	21	80	3	100	40	13	18	27	1.88
571621--571714	41	2.3	41	98	0	179	38	13	19	28	1.90
571753--571778	13	2.0	13	100	0	52	38	15	15	30	1.88
573992--574036	21	2.1	21	84	8	56	53	4	20	22	1.63
577885--577964	20	3.8	20	75	15	79	26	15	15	43	1.85
577950--577988	13	3.0	13	96	0	69	30	17	15	35	1.91
580438--580511	20	3.7	20	78	3	94	33	13	20	32	1.91
580456--580531	21	3.7	21	78	3	100	39	11	18	30	1.87
580438--580531	41	2.3	41	96	0	179	37	12	19	30	1.89
580570--580595	13	2.0	13	100	0	52	38	15	15	30	1.88
581401--582382	507	1.9	507	100	0	1964	47	8	10	33	1.68
591026--591051	13	2.0	13	100	0	52	30	15	15	38	1.88

Tables:   1   2   3   4

The End!