genome.fa.s291.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold291
Parameters: 2 7 7 80 10 50 1000
Length:  742724

Tables:   1   2   3   4   5   

This is table  1  of  5  ( 567 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
236--268	16	2.0	17	94	5	59	90	6	0	3	0.52
1422--1469	24	2.0	23	96	4	87	22	25	20	31	1.98
6786--7084	146	2.0	146	94	0	526	30	28	14	27	1.95
8294--8329	2	18.0	2	94	0	63	50	2	0	47	1.15
10528--10602	34	2.3	33	77	13	82	50	0	2	46	1.15
10759--10830	22	3.2	22	88	2	99	55	9	1	33	1.41
14107--14156	26	1.9	26	84	8	66	52	0	0	48	1.00
14996--15038	15	2.9	15	80	16	54	58	0	0	41	0.98
15882--15914	16	2.0	17	88	5	50	54	0	12	33	1.37
16635--16704	36	2.0	36	88	8	108	45	2	0	51	1.16
16637--16701	27	2.3	29	76	10	73	49	1	0	49	1.10
16696--16743	21	2.3	20	85	3	60	35	6	0	58	1.23
16697--16740	20	2.2	20	84	8	54	36	4	0	59	1.18
21744--21826	10	8.7	10	71	16	52	36	0	0	63	0.94
21778--21822	21	2.2	21	84	7	58	31	0	0	68	0.89
22602--22627	4	6.5	4	100	0	52	46	0	0	53	1.00
24364--24400	3	12.3	3	100	0	74	32	0	0	67	0.91
24554--24611	17	3.6	16	72	25	50	46	1	0	51	1.11
27050--27095	17	2.7	18	90	6	69	52	0	4	43	1.21
27059--27091	10	3.5	10	84	16	52	51	0	6	42	1.26
27123--27170	20	2.4	21	93	6	82	54	0	0	45	0.99
27913--27981	20	3.2	20	78	10	75	42	5	0	52	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
28367--28408	2	21.0	2	100	0	84	50	0	0	50	1.00
28670--28771	52	2.0	52	96	0	186	38	6	11	43	1.68
28959--29020	29	2.2	29	94	2	108	37	22	8	32	1.83
29481--29563	32	2.6	30	75	21	80	56	3	1	38	1.24
31780--31823	3	14.7	3	100	0	88	34	0	0	65	0.93
33331--33390	10	6.0	10	82	5	59	50	1	0	48	1.11
33331--33390	15	4.0	15	75	14	61	50	1	0	48	1.11
34413--34477	17	4.0	17	76	20	59	52	0	0	47	1.00
34489--34529	20	2.0	21	95	4	75	68	0	0	31	0.90
34806--34845	21	1.9	21	85	10	55	35	0	0	65	0.93
35078--35146	17	4.0	17	74	9	59	36	1	0	62	1.04
36009--36053	22	2.0	22	83	8	56	62	0	4	33	1.15
37686--37717	2	16.5	2	93	6	57	53	46	0	0	1.00
42720--42793	20	3.6	21	76	20	75	36	2	2	58	1.27
42670--42793	49	2.7	49	79	10	122	33	4	3	58	1.33
42729--42807	40	2.0	40	84	0	104	40	5	2	51	1.37
42850--42884	13	2.5	15	86	13	56	22	0	0	77	0.78
43271--43303	4	8.2	4	100	0	66	24	0	0	75	0.80
44090--44127	16	2.3	17	86	4	51	60	5	2	31	1.33
45206--45254	16	3.3	15	77	16	57	26	6	6	61	1.43
45265--45319	17	3.4	17	75	25	64	41	0	0	58	0.98
45265--45329	18	3.9	19	70	27	58	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45263--45341	32	2.6	29	84	11	95	44	0	0	55	0.99
45289--45345	15	4.0	15	77	8	57	43	0	0	56	0.99
45670--45744	30	2.5	29	82	10	89	64	1	0	34	1.02
46499--46551	15	3.4	16	78	14	58	71	0	1	26	0.96
46501--46568	20	3.3	19	76	15	55	70	0	2	26	1.01
47236--47286	14	3.6	14	76	5	57	37	1	0	60	1.08
47285--47327	17	2.4	18	80	3	52	60	0	0	39	0.97
47309--47350	21	2.0	22	85	4	59	54	0	0	45	0.99
47494--47572	28	2.8	28	82	7	88	55	0	0	44	0.99
47792--47829	19	1.9	19	89	5	58	55	0	0	44	0.99
47849--47887	20	1.9	21	89	5	62	33	0	15	51	1.44
47897--47955	22	2.8	22	75	25	65	37	0	0	62	0.95
47894--47955	20	2.9	23	71	26	64	37	0	0	62	0.95
49091--49120	14	2.1	14	93	6	51	60	0	0	40	0.97
49313--49393	29	2.8	29	78	12	87	40	6	1	51	1.35
49412--49510	30	3.3	29	81	4	117	59	0	0	40	0.97
49381--49505	66	1.9	64	80	8	144	56	0	0	44	0.99
50226--50259	4	8.5	4	86	0	50	2	26	0	70	1.01
55492--55523	16	2.1	16	88	11	50	46	0	0	53	1.00
56013--56074	20	3.0	21	81	13	67	56	0	1	41	1.09
56049--56088	21	2.0	21	85	5	55	52	0	0	47	1.00
56023--56088	20	3.2	20	80	10	62	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
57513--57567	19	2.9	19	71	12	60	52	0	3	43	1.18
57867--57937	28	2.7	27	81	14	78	59	0	0	40	0.98
58432--58477	21	2.1	22	84	4	58	58	4	2	34	1.30
59093--59131	2	19.5	2	94	0	69	51	2	0	46	1.14
59798--59823	2	13.0	2	100	0	52	50	0	0	50	1.00
60677--60713	18	2.1	17	90	5	56	37	0	2	59	1.12
60730--60788	27	2.1	28	81	6	66	45	10	1	42	1.48
62439--62498	18	3.4	18	74	25	56	48	0	0	51	1.00
62434--62553	35	3.4	34	78	11	100	42	0	0	57	0.98
62410--62526	45	2.8	40	77	16	119	46	0	0	53	1.00
62418--62553	11	12.6	11	71	17	90	42	0	0	57	0.98
62512--62575	25	2.6	25	80	16	71	34	1	1	62	1.14
62423--62553	30	4.2	30	74	16	99	42	0	0	57	0.98
62841--62899	11	5.6	11	76	7	61	40	0	0	59	0.97
62845--62910	32	2.1	31	97	2	123	42	0	0	57	0.98
66140--66190	17	2.8	18	70	8	50	56	1	0	41	1.10
69502--69534	6	5.5	6	96	0	57	45	0	33	21	1.52
69838--69921	42	2.0	41	82	11	100	55	0	1	42	1.07
70988--71026	2	19.5	2	100	0	78	51	0	0	48	1.00
71502--71545	21	2.2	20	84	12	54	45	4	0	50	1.22
73618--73648	3	10.3	3	100	0	62	0	32	0	67	0.91
74278--74315	19	2.0	20	84	5	51	42	5	2	50	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
74541--74593	22	2.4	23	81	12	67	69	0	0	30	0.88
74542--74701	27	6.0	27	67	19	86	61	0	0	38	0.96
74545--74639	9	10.7	9	73	20	67	62	0	0	37	0.96
74545--74593	4	11.5	4	79	12	53	69	0	0	30	0.89
74543--74708	9	19.2	8	68	25	65	60	0	0	39	0.97
74559--74715	78	2.0	78	90	7	248	59	0	0	40	1.02
74757--74784	2	14.0	2	100	0	56	50	0	0	50	1.00
75645--75692	18	2.6	18	81	15	62	41	0	0	58	0.98
77238--77334	29	3.3	30	81	8	110	37	4	0	58	1.17
78534--78590	22	2.7	20	77	20	62	54	0	0	45	0.99
78688--78720	17	1.9	17	93	0	57	48	9	0	42	1.35
78821--78866	18	2.5	19	89	3	76	52	0	0	47	1.00
79250--79276	1	27.0	1	100	0	54	100	0	0	0	0.00
80733--80838	21	5.0	21	67	19	58	44	0	0	54	1.06
80705--80770	11	6.0	11	76	10	64	46	0	0	53	1.00
80737--80869	64	2.1	65	87	4	189	45	1	0	52	1.09
80742--80887	64	2.3	63	80	8	163	44	2	0	52	1.17
85130--85154	13	1.9	13	100	0	50	56	8	4	32	1.47
85453--85486	4	8.0	4	96	3	50	23	0	0	76	0.79
86102--86166	21	3.0	21	78	13	60	63	0	0	36	0.95
86517--86564	19	2.5	19	76	10	53	50	0	2	47	1.12
86725--86765	22	1.9	21	90	5	64	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
89315--89380	2	33.0	2	93	0	96	43	0	6	50	1.27
89469--89511	22	2.0	22	86	9	61	46	2	0	51	1.13
89869--89909	12	3.5	12	87	12	59	65	0	0	34	0.93
97666--97690	2	12.5	2	100	0	50	0	52	0	48	1.00
98020--98066	23	2.0	23	95	0	85	53	12	8	25	1.67
99174--99246	30	2.4	30	83	4	92	35	19	10	34	1.87
107475--107532	9	6.0	9	77	16	55	17	0	41	41	1.49
107482--107545	32	2.0	32	96	0	119	20	0	42	37	1.52
109587--109670	34	2.5	34	96	0	150	16	1	45	36	1.56
109633--109697	25	2.6	25	95	0	112	18	1	44	35	1.59

Tables:   1   2   3   4   5