genome.fa.s291.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold291
Parameters: 2 7 7 80 10 50 1000
Length:  742724

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 567 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
267214--267265	22	2.5	20	72	9	52	44	3	0	51	1.19
268062--268089	2	14.0	2	100	0	56	50	0	0	50	1.00
269145--269217	29	2.5	29	86	4	94	45	1	0	53	1.09
269559--269608	23	2.2	23	92	3	84	58	0	0	42	0.98
269536--269604	27	2.7	27	79	20	87	55	0	4	40	1.20
269693--269785	5	18.6	5	71	19	61	36	1	1	61	1.10
269693--269784	11	9.1	11	71	21	69	35	1	1	61	1.10
269728--269800	20	3.4	20	74	22	67	31	2	1	64	1.16
269704--269786	22	3.6	22	78	13	80	38	1	0	60	1.05
270612--270645	12	2.7	13	86	9	52	35	0	2	61	1.11
271010--271043	17	1.9	18	88	5	52	50	5	5	38	1.51
271137--271227	29	3.1	28	86	9	112	61	1	0	37	1.03
271386--271425	21	1.9	21	85	10	55	40	0	0	60	0.97
273309--273556	124	2.0	123	93	0	424	20	17	22	39	1.92
274449--274473	13	1.9	13	100	0	50	40	4	0	56	1.18
274527--274579	17	3.5	15	73	21	56	49	0	1	49	1.12
282084--282119	3	12.0	3	87	0	54	38	0	0	61	0.96
283898--283951	22	2.4	23	81	12	67	33	1	1	62	1.16
283990--284032	21	2.1	20	86	4	59	65	2	0	32	1.06
288485--288525	21	2.0	21	85	0	55	31	4	2	60	1.30
288995--289035	19	2.1	20	86	4	57	46	0	2	51	1.14
289928--289969	18	2.4	18	80	4	50	47	2	0	50	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
290709--290750	18	2.3	19	80	12	52	50	4	0	45	1.23
293419--293520	12	7.4	15	72	20	64	55	0	0	43	1.06
293428--293497	29	2.4	29	85	7	88	52	1	0	45	1.09
293457--293507	11	4.5	11	77	18	50	56	1	0	41	1.10
293449--293511	29	2.1	30	83	11	85	57	1	0	41	1.08
294881--294945	27	2.4	28	75	19	66	46	0	0	53	1.00
297776--297815	19	2.0	19	85	9	53	42	0	0	57	0.98
297761--297810	15	3.4	15	81	8	50	40	0	0	60	0.97
299097--299147	22	2.3	23	83	9	63	45	0	1	52	1.12
299191--299227	15	2.3	17	86	9	51	54	2	0	43	1.14
299297--299350	26	2.0	27	82	3	65	51	5	1	40	1.36
299962--300012	26	2.0	26	84	7	68	43	1	3	50	1.31
300544--300602	24	2.6	21	77	15	55	50	0	5	44	1.24
300831--300890	21	3.0	20	73	9	59	35	3	3	58	1.31
303046--303204	20	7.2	23	65	18	63	38	1	0	59	1.05
303039--303117	29	2.8	28	74	16	81	39	1	0	59	1.06
303096--303173	29	2.6	30	82	8	88	44	1	0	53	1.08
303096--303173	32	2.5	31	80	11	90	44	1	0	53	1.08
303653--303684	3	10.7	3	100	0	64	65	0	0	34	0.93
305353--305387	17	2.1	17	88	0	52	65	2	0	31	1.07
305482--305536	24	2.2	24	78	9	58	38	3	3	54	1.36
307264--307671	104	4.0	101	73	11	296	42	5	6	45	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
307303--307671	100	3.6	102	80	5	356	42	5	5	46	1.49
307703--307762	2	30.0	2	89	0	93	48	0	1	50	1.11
307995--308019	2	12.5	2	100	0	50	52	0	0	48	1.00
309203--309241	9	4.2	9	87	6	60	43	0	0	56	0.99
309203--309240	5	8.0	5	82	11	53	42	0	0	57	0.98
310325--310378	25	2.0	28	80	16	62	44	0	0	55	0.99
310832--310865	13	2.6	13	86	13	52	44	11	0	44	1.40
312702--312789	22	4.0	21	78	11	79	54	0	1	44	1.07
312702--312786	21	3.9	22	76	15	70	55	0	1	43	1.07
312946--312985	15	2.5	15	84	8	53	25	0	0	75	0.81
312956--312988	16	2.0	17	88	5	50	24	0	0	75	0.80
318573--318620	5	9.6	5	77	8	53	39	0	2	58	1.10
319383--319430	22	2.1	23	88	3	71	41	0	6	52	1.27
319556--319594	19	2.0	20	90	5	62	69	0	0	30	0.89
319549--319594	23	2.0	22	83	4	56	67	0	0	32	0.91
319558--319683	10	12.6	10	68	17	57	57	3	0	38	1.20
322595--322623	3	9.7	3	100	0	58	31	0	0	68	0.89
326172--326249	20	4.2	20	70	20	62	39	0	0	60	0.97
326201--326257	19	3.0	19	73	12	55	38	0	0	61	0.96
326854--326954	8	13.6	7	69	13	51	62	0	0	37	0.96
326840--326882	14	3.1	14	83	6	52	69	0	0	30	0.88
326867--326950	30	2.8	32	77	13	92	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
327226--327256	3	10.3	3	100	0	62	64	0	0	35	0.94
327853--327890	19	2.1	18	90	9	60	57	0	0	42	0.98
328680--328738	13	4.5	13	76	16	59	49	0	1	49	1.11
328678--328732	14	4.1	14	81	9	53	50	0	1	47	1.11
329932--329968	18	2.0	20	89	10	60	37	0	2	59	1.12
329928--330016	32	2.7	33	75	7	90	38	0	1	60	1.04
329984--330030	21	2.2	21	81	11	51	34	2	2	61	1.20
330087--330126	20	2.0	20	85	4	55	25	0	2	72	0.97
330117--330164	26	1.9	24	83	8	60	41	2	2	54	1.24
330140--330217	32	2.4	33	80	6	88	46	1	1	51	1.17
330086--330236	19	7.9	19	65	19	73	39	1	1	57	1.18
339295--339326	3	10.7	3	100	0	64	34	31	0	34	1.58
340614--340680	28	2.4	27	76	16	75	59	4	5	29	1.41
342339--342371	14	2.4	14	94	0	57	24	0	3	72	0.98
358121--358303	37	4.9	38	78	2	120	35	16	17	30	1.93
358210--358301	37	2.5	37	83	0	121	35	18	15	30	1.92
362222--362405	34	5.4	34	85	0	235	40	25	7	26	1.82
366003--366187	34	5.5	34	89	0	273	25	7	27	40	1.82
366003--366187	102	1.8	101	94	1	325	25	7	27	40	1.82
366492--366554	19	3.3	19	90	0	90	28	17	19	34	1.94
370621--370805	34	5.5	34	86	0	255	25	7	25	40	1.82
371357--371467	34	3.3	34	86	5	161	38	28	7	25	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
372444--372628	34	5.5	34	89	0	273	25	7	27	40	1.82
372444--372628	102	1.8	101	94	1	325	25	7	27	40	1.82
378091--378153	19	3.3	19	90	0	90	34	19	17	28	1.94
378460--378644	34	5.5	34	87	3	257	40	26	7	25	1.82
383745--383929	34	5.5	34	87	3	257	40	26	7	25	1.82
383745--383929	102	1.8	101	92	1	316	40	26	7	25	1.82
388344--388528	34	5.5	34	87	3	257	40	26	7	25	1.82
389221--389283	19	3.3	19	90	0	90	34	19	17	28	1.94
392394--392577	34	5.4	34	85	0	235	26	7	25	40	1.82
396991--397175	34	5.5	34	88	0	264	25	7	26	40	1.82
398744--398956	34	6.3	34	85	1	259	24	7	25	41	1.82
398744--398956	102	2.1	101	91	0	336	24	7	25	41	1.82
399348--399532	34	5.5	34	87	3	257	40	26	7	25	1.82
403606--403661	19	2.9	19	94	0	94	35	17	14	32	1.90
403797--403953	34	4.6	34	87	0	224	26	8	25	38	1.85
405721--405886	34	4.9	34	89	0	242	25	8	26	39	1.84
406590--406676	33	2.6	34	85	8	110	18	10	2	68	1.28
408620--408686	31	2.2	31	91	5	109	22	11	1	64	1.35
409135--409226	28	3.4	27	81	8	100	25	7	21	45	1.78
409282--409330	20	2.5	20	86	0	71	10	46	4	38	1.57
413708--413799	28	3.4	27	81	8	100	25	7	21	45	1.78
413855--413903	20	2.5	20	86	0	71	10	46	4	38	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
415153--415179	3	9.0	3	100	0	54	66	0	0	33	0.92
415741--415788	17	2.8	17	80	20	55	37	2	2	58	1.22
417232--417269	3	12.7	3	100	0	76	34	0	0	65	0.93
421779--421831	23	2.3	23	75	18	56	0	30	3	66	1.10
423081--423122	22	2.0	21	95	4	75	33	0	0	66	0.92
423081--423123	11	3.9	11	79	11	52	32	0	0	67	0.91
430459--430502	22	2.0	22	100	0	88	40	13	18	27	1.88
434652--434682	13	2.4	13	94	0	53	70	0	0	29	0.87
435382--435428	22	2.2	22	85	7	62	31	8	4	55	1.49
435498--435633	34	4.0	34	96	0	245	21	0	37	41	1.53

Tables:   1   2   3   4   5