Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold291
Parameters: 2 7 7 80 10 50 1000
Length:  742724

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 567 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
573524--573635
39
2.9
39
73
18
101
60
0
0
39
0.97
573539--573600
13
4.5
14
73
20
51
56
0
0
43
0.99
573525--573625
37
2.9
33
79
16
91
59
0
0
40
0.97
573505--573640
10
14.3
9
67
26
59
60
0
0
38
1.02
580963--581043
23
3.2
25
72
22
80
58
3
7
30
1.43
580957--581063
50
2.2
48
86
6
146
55
4
8
31
1.51
581088--581136
17
2.8
18
77
22
59
53
0
0
46
1.00
581942--581993
26
1.9
27
85
14
72
59
1
1
36
1.19
582431--582467
18
2.1
18
94
0
65
45
0
2
51
1.15
582440--582504
25
2.5
25
76
18
62
36
3
3
56
1.30
587800--587860
21
2.9
22
70
4
54
21
6
39
32
1.79
597925--597987
5
12.0
5
76
15
56
36
0
0
63
0.95
597922--597982
11
5.5
11
81
14
65
34
0
0
65
0.93
597928--597978
27
1.9
26
92
4
84
33
0
0
66
0.92
597945--597990
17
2.7
17
82
0
56
36
0
0
63
0.95
601669--601699
2
15.5
2
100
0
62
0
48
0
51
1.00
604022--604058
16
2.4
15
86
4
56
62
0
0
37
0.96
604008--604050
13
3.4
12
78
9
50
55
0
0
44
0.99
610264--610314
23
2.3
22
80
12
59
31
1
3
62
1.24
610371--610396
12
2.2
12
100
0
52
53
7
0
38
1.30
615487--615529
2
21.5
2
100
0
86
0
48
0
51
1.00
615527--615567
4
10.2
4
100
0
82
24
24
0
51
1.49
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
617909--617962
27
2.0
26
92
3
90
42
1
5
50
1.36
617912--617962
9
5.7
9
84
9
68
45
1
5
47
1.38
618058--618135
18
4.0
19
69
17
54
42
0
3
53
1.19
618226--618260
17
2.1
17
89
10
54
60
0
0
40
0.97
620754--620805
26
2.0
27
92
3
88
28
0
0
71
0.87
620762--620800
11
3.6
11
86
6
53
28
0
0
71
0.86
620763--620808
23
2.0
23
82
0
56
30
0
0
69
0.89
620925--620985
20
3.0
20
72
15
61
65
0
6
27
1.17
620928--620994
19
3.3
21
77
10
68
67
0
5
26
1.14
620965--621016
25
2.1
24
82
3
59
63
0
1
34
1.06
633036--633082
22
2.1
22
84
7
60
53
2
0
44
1.12
634240--634295
18
2.8
20
79
20
64
23
0
5
71
1.06
636632--636660
15
1.9
15
100
0
58
41
6
0
51
1.28
640622--640676
20
2.6
21
85
8
67
54
0
1
43
1.10
641903--641950
25
1.9
25
83
8
62
45
2
0
52
1.12
647706--647746
3
13.7
3
100
0
82
31
0
0
68
0.90
651340--651371
2
16.0
2
93
0
55
50
3
46
0
1.17
652144--652240
30
3.2
30
70
18
85
38
6
7
48
1.56
653128--653181
16
3.4
16
76
7
56
20
18
25
35
1.95
653160--653279
53
2.3
53
77
8
127
25
13
21
39
1.90
653981--654051
16
4.4
16
76
0
70
22
16
18
42
1.89
654101--654148
25
2.0
24
84
15
64
47
4
2
45
1.33
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
654220--654318
38
2.6
38
98
0
189
35
19
22
23
1.96
654383--654439
17
3.3
17
73
9
53
43
1
0
54
1.10
654400--654454
24
2.4
23
82
8
67
49
1
0
49
1.11
654392--654471
28
2.9
29
77
15
71
46
1
0
52
1.08
656587--656626
21
1.9
21
89
0
62
37
5
0
57
1.21
656795--656859
31
2.1
32
88
5
98
50
24
3
21
1.63
658717--658870
77
2.0
76
83
3
193
35
6
11
46
1.66
663587--663684
50
2.0
50
95
0
178
52
14
9
24
1.70
673252--673285
2
17.0
2
88
11
52
47
0
2
50
1.16
674573--674607
18
1.9
18
100
0
70
37
5
5
51
1.50
674567--674609
18
2.7
15
77
19
50
34
6
9
48
1.62
676903--676938
2
18.0
2
100
0
72
50
0
0
50
1.00
677878--677917
21
1.9
21
94
0
71
35
0
2
62
1.09
678600--678724
64
2.0
60
85
8
164
15
12
12
60
1.60
679328--679546
34
6.5
34
89
1
316
39
26
7
26
1.83
683618--683674
19
3.0
19
78
0
60
35
14
15
35
1.88
683980--684162
34
5.4
34
85
3
226
40
25
7
26
1.81
687532--687588
17
3.5
16
80
15
64
77
0
8
14
0.99
687977--688027
25
2.0
26
92
3
86
33
0
1
64
1.05
689641--689704
29
2.3
29
81
5
69
39
7
10
42
1.69
690259--690291
7
4.7
7
100
0
66
42
0
0
57
0.98
699902--699943
17
2.5
17
84
3
50
73
2
11
11
1.18
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
709632--709683
27
2.0
26
96
3
95
44
11
3
40
1.59
709635--709684
12
3.9
13
76
19
52
44
10
6
40
1.63
714409--714460
27
2.0
26
96
3
95
44
11
3
40
1.59
714412--714461
12
3.9
13
76
19
52
44
10
6
40
1.63
715862--715905
1
44.0
1
81
0
52
90
6
2
0
0.51
715862--715905
17
2.6
16
89
10
70
90
6
2
0
0.51
721604--721656
21
2.5
21
84
3
61
52
1
0
45
1.11
721609--721663
22
2.5
21
85
5
65
56
1
0
41
1.10
722768--722829
18
3.0
20
76
23
67
25
0
4
69
1.08
725345--725380
3
12.0
3
100
0
72
66
0
0
33
0.92
728830--728886
20
2.7
21
82
15
73
54
0
3
42
1.17
730126--730183
30
2.0
30
86
10
84
48
0
0
51
1.00
731207--731283
32
2.4
32
75
16
79
36
0
1
62
1.04
731721--731763
19
2.3
19
84
8
52
72
0
0
27
0.85
731853--731885
15
2.1
17
88
11
52
75
3
3
18
1.06
732078--732114
2
18.5
2
100
0
74
51
0
0
48
1.00
733966--734090
66
1.9
66
86
3
180
41
4
8
45
1.54
737765--737983
34
6.5
33
88
1
278
40
26
7
25
1.81
737765--737983
68
3.2
67
87
3
314
40
26
7
25
1.81
737764--737983
102
2.2
101
92
2
370
40
26
7
25
1.81
742399--742521
33
3.6
33
86
3
174
39
27
8
25
1.84

Tables:   1   2   3   4   5

The End!