genome.fa.s294.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold294
Parameters: 2 7 7 80 10 50 1000
Length:  984289

Tables:   1   2   3   4   

This is table  1  of  4  ( 473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4569--4682	51	2.3	50	82	1	138	27	16	14	41	1.88
17583--17633	25	2.0	25	96	0	93	52	19	17	9	1.72
18893--19540	28	22.4	28	82	8	595	29	30	17	22	1.97
19020--19088	34	2.0	34	85	0	93	26	20	23	30	1.98
18967--19540	90	6.5	91	78	10	342	29	30	17	22	1.97
20605--20719	51	2.3	50	87	1	167	30	16	13	40	1.86
21349--21374	13	2.0	13	100	0	52	38	15	15	30	1.88
21331--21395	32	2.0	32	87	6	94	43	15	13	27	1.85
25442--25472	15	2.1	15	93	0	53	48	16	22	12	1.80
27183--27207	13	1.9	13	100	0	50	32	20	16	32	1.94
27319--27364	21	2.2	20	81	11	58	32	19	4	43	1.71
29731--29783	19	2.7	20	85	8	72	43	15	13	28	1.84
33417--34367	157	6.1	155	79	5	877	39	19	16	24	1.91
33426--34325	311	2.9	308	81	4	1013	39	19	16	24	1.91
36117--36562	165	2.7	165	77	10	423	51	7	10	30	1.63
40113--40165	13	4.5	13	75	22	55	33	16	13	35	1.88
40113--40181	33	2.1	33	89	5	104	36	18	13	31	1.89
40210--40282	20	3.7	19	85	3	74	39	16	15	28	1.89
41820--41886	33	2.0	33	88	0	98	34	11	13	40	1.81
41840--41864	13	1.9	13	100	0	50	36	16	16	32	1.90
41930--41954	13	1.9	13	100	0	50	32	16	16	36	1.90
52536--52588	20	2.7	20	88	5	72	32	18	15	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
52619--52645	13	2.1	13	100	0	54	40	14	14	29	1.86
53472--53552	23	3.4	23	79	12	92	2	16	24	56	1.52
53472--53579	25	4.5	23	73	15	85	1	15	25	57	1.49
53460--53579	48	2.5	48	84	2	152	2	15	23	58	1.50
53460--53602	12	12.1	12	69	16	75	2	16	24	56	1.53
53557--53602	22	2.0	23	87	4	67	2	17	28	52	1.56
54225--54259	10	3.4	10	84	7	52	22	0	0	77	0.78
54220--54275	21	2.5	23	91	8	89	25	0	1	73	0.93
60388--60446	20	2.9	20	82	10	66	44	11	10	33	1.75
61755--61827	20	3.6	20	81	3	101	35	13	19	31	1.91
61866--61891	13	2.0	13	100	0	52	38	15	15	30	1.88
61848--61911	32	2.0	33	87	3	94	42	14	15	28	1.86
67989--68067	20	3.7	21	75	15	72	26	13	15	44	1.84
68054--68079	13	2.0	13	100	0	52	30	15	15	38	1.88
70531--70603	20	3.6	20	81	3	101	35	13	19	31	1.91
70642--70667	13	2.0	13	100	0	52	38	15	15	30	1.88
70624--70687	32	2.0	33	87	3	94	42	14	15	28	1.86
76310--76379	35	2.0	35	86	5	97	42	11	10	35	1.74
77773--77803	13	2.4	13	94	0	53	35	12	16	35	1.87
77870--77896	13	2.1	13	100	0	54	40	14	14	29	1.86
86546--86609	13	5.4	13	73	17	59	32	14	14	39	1.85
86526--86625	33	3.0	33	89	5	150	33	17	12	38	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
86526--86589	20	3.5	20	70	27	70	31	17	10	40	1.84
86675--86739	19	3.7	19	76	23	88	38	16	15	29	1.90
86675--86752	13	7.2	12	70	29	68	37	16	15	30	1.90
86677--86773	32	3.0	32	95	1	167	37	16	16	29	1.91
88971--89036	20	3.3	20	76	19	66	43	13	9	33	1.76
88986--89046	20	3.0	20	85	7	88	44	11	11	32	1.76
88989--89185	82	2.4	81	87	4	272	40	13	13	32	1.84
89591--89628	20	1.9	20	100	0	76	31	5	21	42	1.75
94648--94955	78	3.9	78	79	9	302	32	11	27	28	1.92
97336--97455	51	2.3	52	85	5	163	40	10	16	32	1.83
97494--97544	20	2.5	21	87	3	68	33	17	9	39	1.83
100084--100109	13	2.0	13	100	0	52	38	15	15	30	1.88
102327--102371	21	2.1	21	84	8	56	53	4	20	22	1.63
106284--106309	13	2.0	13	100	0	52	30	15	15	38	1.88
108842--108868	13	2.1	13	100	0	54	40	14	14	29	1.86
444044--444113	28	2.5	28	83	0	86	24	17	34	24	1.96
444153--444375	79	2.8	79	81	6	290	29	13	27	29	1.94
444311--444441	51	2.6	51	90	2	192	32	12	25	29	1.92
446873--446924	21	2.6	21	81	6	63	32	15	13	38	1.86
449025--449292	87	3.2	86	84	6	318	23	42	10	23	1.85
462085--462136	2	26.0	2	100	0	104	50	0	0	50	1.00
462302--462337	3	12.0	3	93	0	63	63	0	2	33	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
462448--462488	22	1.9	21	85	5	55	51	0	0	48	1.00
463077--463108	15	2.1	15	100	0	64	50	0	6	43	1.27
463207--463245	11	3.4	11	80	13	51	61	5	0	33	1.18
463227--463297	28	2.5	28	78	15	76	69	4	2	23	1.20
464103--464170	17	4.1	17	70	12	52	36	4	4	54	1.41
464921--464966	20	2.2	21	92	3	76	41	4	17	36	1.69
466040--466084	21	2.3	20	85	11	58	26	20	11	42	1.85
468627--468697	16	4.5	16	77	13	51	26	15	14	43	1.85
468642--468679	15	2.5	15	91	4	58	28	13	10	47	1.76
469188--469528	155	2.2	153	81	5	366	26	14	17	42	1.87
469606--469889	152	1.9	152	81	6	351	29	13	17	39	1.87
469979--470020	17	2.4	17	88	8	57	50	2	0	47	1.14
471950--471981	15	2.1	15	94	0	55	84	3	12	0	0.74
474528--474966	112	3.9	110	84	3	549	33	15	12	37	1.86
475569--475857	74	3.9	72	76	7	222	17	23	13	46	1.83
479487--479547	11	5.5	11	81	18	65	1	27	0	70	0.97
479499--479537	15	2.7	15	84	4	53	0	25	0	74	0.82
479503--479547	21	2.1	21	84	8	56	0	28	0	71	0.87
480042--480592	167	3.4	163	79	8	554	49	6	11	31	1.66
484938--485000	17	3.9	16	70	22	51	0	9	15	74	1.06
485003--485092	35	2.6	34	78	18	87	6	13	6	73	1.24
485044--485097	20	2.6	19	77	13	54	9	11	5	74	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
485087--485133	22	2.1	22	84	7	60	8	12	4	74	1.19
485388--485454	30	2.2	30	91	0	107	17	17	10	53	1.71
485526--485567	12	3.3	12	81	12	57	9	21	11	57	1.63
486582--486646	33	2.0	33	87	6	96	29	16	16	36	1.92
486697--486748	19	2.7	19	84	3	59	42	11	13	32	1.80
487343--487414	34	2.1	34	97	0	135	31	18	5	44	1.72
489436--489461	13	2.0	13	100	0	52	38	15	15	30	1.88
489415--489481	33	2.0	33	88	0	98	43	16	16	23	1.87
489501--489600	19	5.9	18	73	26	103	38	15	12	35	1.84
489523--489579	13	3.9	13	76	24	60	35	15	14	35	1.88
489504--489598	32	3.0	32	98	0	181	36	15	12	34	1.86
489656--489712	21	2.7	21	97	0	105	36	19	10	33	1.86
489717--489741	12	2.1	12	100	0	50	16	0	0	84	0.63
490928--490954	13	2.1	13	100	0	54	29	14	14	40	1.86
497179--497207	13	2.2	13	100	0	58	27	13	17	41	1.87
499008--499058	19	2.7	19	100	0	102	52	0	35	11	1.38
499062--499138	37	2.1	37	95	0	136	33	2	31	32	1.72
499071--499139	18	3.7	19	74	12	72	33	1	31	33	1.67
499679--499705	13	2.1	13	100	0	54	29	14	14	40	1.86
499691--499746	19	2.8	21	86	8	80	33	14	17	33	1.90
499691--499828	20	6.8	20	70	18	79	34	15	17	31	1.92
499776--499861	20	4.7	19	74	24	78	38	11	18	31	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
499816--499841	13	2.0	13	100	0	52	30	15	15	38	1.88
499791--499861	33	2.2	33	94	0	124	40	11	16	30	1.84
501678--501707	13	2.2	14	94	5	53	33	13	16	36	1.88
501658--501726	32	2.1	33	91	2	113	33	11	17	37	1.86
501764--501788	13	1.9	13	100	0	50	32	16	16	36	1.90
501797--501927	52	2.5	52	94	0	244	35	19	16	29	1.93
505489--505522	15	2.3	15	89	0	50	8	14	23	52	1.69
506871--506923	20	2.7	20	100	0	106	30	15	18	35	1.92
507009--507065	21	2.6	22	82	15	66	45	17	5	31	1.71
507765--509565	333	5.4	334	78	4	1670	34	19	29	16	1.94

Tables:   1   2   3   4