genome.fa.s294.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold294
Parameters: 2 7 7 80 10 50 1000
Length:  984289

Tables:   1   2   3   4   

This is table  2  of  4  ( 473 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
507773--509561	42	42.8	42	73	8	1223	34	19	29	16	1.94
509724--509976	44	5.7	43	72	10	147	41	16	20	20	1.90
509722--509996	134	2.1	132	84	4	347	41	16	21	20	1.90
510163--510385	89	2.5	89	83	0	275	30	14	26	27	1.95
510649--510836	88	2.1	88	78	3	191	42	13	19	24	1.88
517889--517936	21	2.2	21	85	10	62	37	4	6	52	1.46
518932--518965	10	3.4	10	87	0	50	0	23	32	44	1.54
519088--519131	13	3.3	13	78	15	54	0	9	18	72	1.10
519083--519144	27	2.2	28	80	8	65	1	8	16	74	1.13
519120--519168	19	2.6	18	81	9	53	6	10	4	79	1.03
519546--519612	30	2.2	30	91	0	107	17	19	11	50	1.77
519676--519725	25	2.0	25	88	7	75	10	14	14	62	1.55
520062--520088	7	3.9	7	100	0	54	25	0	0	74	0.83
521823--522335	155	3.3	155	77	7	404	27	16	17	38	1.91
521887--522456	155	3.7	154	78	6	514	27	16	16	39	1.90
521900--522456	310	1.8	308	79	7	653	26	16	16	40	1.90
526067--526117	16	3.2	15	89	10	75	29	11	9	49	1.72
526067--526133	32	2.1	32	86	10	93	29	13	10	46	1.76
526176--526237	6	12.4	5	75	21	51	54	1	0	43	1.09
527263--527339	29	2.9	26	81	12	77	55	1	2	40	1.22
527291--527339	27	1.9	26	88	12	75	59	0	4	36	1.17
527992--528073	41	1.9	41	82	9	101	48	3	1	46	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
531974--532002	1	29.0	1	100	0	58	0	0	100	0	0.00
535842--535869	2	14.0	2	100	0	56	50	0	0	50	1.00
535867--535894	4	7.0	4	100	0	56	25	0	25	50	1.50
536557--536640	41	2.0	42	95	2	152	13	25	34	27	1.93
536739--536782	17	2.7	16	86	6	61	40	0	0	59	0.98
536747--536815	28	2.5	28	80	4	86	42	0	2	55	1.15
536767--536864	38	2.7	35	82	16	112	41	0	3	55	1.15
536808--536863	18	3.2	18	69	19	55	37	0	1	60	1.07
536813--536863	17	3.1	16	71	18	50	37	0	1	60	1.08
536744--536867	28	4.4	29	69	18	77	42	0	2	54	1.13
536772--536877	34	3.0	32	79	17	97	39	0	2	56	1.20
536828--536902	29	2.6	29	81	10	73	40	1	2	56	1.22
538570--538671	50	2.0	50	88	0	150	38	3	7	50	1.50
540895--540938	14	3.4	14	82	17	51	52	0	0	47	1.00
541125--541167	16	2.6	16	85	10	52	55	0	0	44	0.99
541600--541629	14	2.1	15	93	6	53	46	0	0	53	1.00
541578--541619	17	2.5	17	76	3	50	40	0	0	59	0.97
541611--541667	24	2.5	23	81	13	64	52	1	0	45	1.11
541856--541904	2	24.5	2	100	0	98	48	0	51	0	1.00
542350--542386	3	12.3	3	100	0	74	67	0	0	32	0.91
556521--556633	8	14.2	8	72	18	76	83	11	3	1	0.85
556523--556633	16	6.8	16	78	11	100	82	11	3	1	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
556522--556633	22	4.9	23	78	8	106	83	11	3	1	0.86
556550--556631	15	5.5	15	74	11	71	81	15	0	2	0.79
556551--556631	4	20.8	4	75	16	55	81	16	0	2	0.80
556521--556620	1	100.0	1	71	0	56	84	10	4	2	0.84
558074--558334	57	4.7	56	84	8	288	34	29	16	18	1.93
558064--558286	85	2.7	85	85	8	291	34	30	16	19	1.94
558074--558334	28	9.5	28	79	11	288	34	29	16	18	1.93
558351--558733	43	9.1	43	75	12	346	26	23	19	31	1.98
558352--558651	82	3.7	82	93	0	510	26	23	20	30	1.98
559633--559658	13	2.0	13	100	0	52	30	15	15	38	1.88
565297--565346	24	2.1	24	100	0	100	52	4	16	28	1.61
568118--568156	8	4.9	8	93	0	51	48	5	2	43	1.38
568126--568168	2	21.5	2	85	0	59	48	4	2	44	1.36
572732--572792	24	2.6	22	78	14	68	47	13	4	34	1.64
581348--581400	22	2.4	22	96	0	97	26	18	28	26	1.98
583744--583787	20	2.3	19	81	14	54	50	20	4	25	1.67
588076--588117	14	2.8	15	82	17	52	61	4	11	21	1.48
588294--588318	13	1.9	13	100	0	50	8	0	4	88	0.64
588740--589191	165	2.7	162	78	9	468	49	8	12	29	1.69
590221--590525	85	3.6	83	74	11	244	43	13	23	19	1.87
590205--590621	161	2.5	162	79	5	455	42	15	23	18	1.88
591651--592478	79	10.4	79	88	1	1149	32	13	25	28	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
593881--594120	35	6.9	35	97	0	444	19	31	6	42	1.76
594128--594156	12	2.3	13	94	5	51	27	0	3	68	1.05
594824--594966	61	2.3	62	83	7	168	29	18	25	26	1.98
594981--595174	55	3.4	56	84	10	275	22	20	29	27	1.98
594823--595117	154	1.9	157	85	5	409	25	18	29	26	1.98
595038--595335	156	1.9	156	86	6	420	25	20	29	25	1.99
595195--595340	61	2.4	61	85	5	179	28	20	25	25	1.99
594823--595343	217	2.4	211	85	5	690	26	19	28	25	1.98
596324--596348	9	2.8	9	100	0	50	8	0	8	84	0.79
606652--606680	4	7.2	4	100	0	58	75	0	0	24	0.80
608866--608939	28	2.6	29	89	6	116	22	20	35	21	1.96
608893--609270	79	4.8	79	91	0	594	31	14	26	27	1.95
610677--610911	35	6.7	35	96	0	427	20	31	6	42	1.77
611163--611498	84	4.0	83	80	6	333	45	15	20	18	1.85
611201--611303	42	2.5	41	82	3	125	48	10	22	18	1.78
611231--611425	42	4.7	41	72	9	133	46	15	20	18	1.84
611170--611491	168	1.9	169	84	4	427	45	15	20	18	1.85
611550--611874	81	4.0	81	81	1	355	39	13	28	18	1.89
611551--611852	41	7.4	41	69	8	186	38	14	29	18	1.90
614833--614865	11	2.8	12	86	9	50	3	12	0	84	0.72
614831--614881	12	4.5	11	77	18	59	1	11	0	86	0.66
614845--614881	14	2.5	15	86	4	58	0	10	0	89	0.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
615394--615952	165	3.4	160	79	8	486	49	8	10	32	1.67
621387--621515	52	2.5	52	96	0	240	34	19	18	27	1.95
628439--628472	13	2.4	15	90	9	54	82	17	0	0	0.67
629770--629928	34	4.7	34	82	3	171	20	32	13	33	1.91
629912--630005	33	3.0	31	74	7	82	26	37	18	18	1.93
629934--629998	33	2.0	33	90	0	103	27	30	20	21	1.98
629998--631131	48	23.8	48	83	5	1293	24	26	18	30	1.98
629993--631131	193	6.0	192	88	5	1616	24	26	18	30	1.98
630004--631131	284	3.9	284	90	4	1670	24	26	18	30	1.98
633371--633436	19	3.8	18	75	24	79	34	10	16	37	1.83
633373--633433	32	1.9	32	96	0	113	36	9	18	36	1.84
633512--633640	52	2.5	52	94	0	231	35	19	17	27	1.94
638492--638519	13	2.2	13	100	0	56	28	14	17	39	1.89
653458--653791	29	11.7	28	79	6	246	29	31	17	20	1.96
653461--653791	57	5.8	57	76	11	284	29	30	18	21	1.96
653500--653716	86	2.5	86	91	3	348	28	33	19	19	1.96
655338--655501	42	4.0	42	79	9	160	40	15	25	18	1.90
655499--655649	61	2.5	61	78	8	166	31	21	23	23	1.98
655591--655768	94	1.9	93	88	1	266	27	21	27	23	1.99
655690--655850	57	2.9	55	86	3	205	24	23	25	26	2.00
668526--668690	32	5.2	31	74	11	122	32	27	16	23	1.96
668534--668653	64	1.9	64	82	6	154	33	30	12	24	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
669792--669886	20	4.8	19	74	14	77	33	15	10	40	1.82
672897--673155	95	2.7	94	81	5	290	24	23	13	38	1.91
674534--674600	32	2.1	32	91	0	107	44	7	5	41	1.57
674819--674857	20	2.0	20	84	0	51	33	10	23	33	1.88
675374--675429	28	2.0	28	96	0	103	32	5	17	44	1.72
676240--676288	21	2.4	20	80	10	55	48	18	0	32	1.48
677882--677918	2	18.5	2	94	0	65	48	2	0	48	1.15
678533--678688	79	2.0	79	98	0	303	34	10	10	44	1.72
678950--678986	17	2.1	18	90	5	58	62	8	0	29	1.24
679537--679692	43	3.7	41	73	8	116	19	21	10	47	1.80

Tables:   1   2   3   4