genome.fa.s299.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold299
Parameters: 2 7 7 80 10 50 1000
Length:  460272

Tables:   1   2   3   

This is table  3  of  3  ( 297 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
363454--364152	158	4.4	157	67	15	382	30	20	14	35	1.92
363343--376531	159	83.3	158	64	14	2170	31	19	14	34	1.92
372806--374083	634	2.0	636	88	1	1909	30	19	14	35	1.91
357822--373454	476	32.9	475	88	2	20362	31	19	14	35	1.92
373435--376899	475	7.3	475	85	3	4312	30	19	14	35	1.92
377170--380689	158	22.3	157	64	15	631	36	14	17	30	1.91
376906--380857	475	8.3	476	85	2	4907	36	14	18	30	1.91
380857--382393	474	3.2	475	86	3	2040	31	18	13	36	1.90
385735--385759	13	1.9	13	100	0	50	32	16	20	32	1.94
389685--389729	22	2.1	21	84	8	56	22	15	6	55	1.63
389674--389729	21	2.7	21	75	13	62	23	14	7	55	1.63
391948--391973	13	2.0	13	100	0	52	30	15	15	38	1.88
391927--391991	32	2.0	34	90	6	107	27	12	18	41	1.86
392357--395526	475	6.7	475	85	2	4133	31	18	14	36	1.90
392357--395526	946	3.3	941	87	2	4290	31	18	14	36	1.90
395311--395793	267	1.8	267	85	3	686	29	17	13	38	1.89
395531--398410	476	6.1	475	83	3	3462	31	18	14	36	1.91
397994--399603	535	3.0	532	81	5	1686	30	18	14	36	1.91
399694--400168	236	2.0	236	88	2	695	33	20	14	32	1.92
400488--402803	951	2.4	947	84	2	2996	31	17	13	37	1.89
402378--403242	432	2.0	431	85	3	1179	30	18	13	37	1.90
403456--403745	145	2.0	145	84	1	384	27	16	14	41	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
403631--404460	462	1.8	459	87	2	1261	29	17	14	38	1.90
408615--412284	476	7.8	474	86	3	4462	31	18	13	36	1.90
412420--414003	476	3.3	474	86	2	2077	30	18	14	36	1.90
412420--416810	475	9.3	476	79	5	4282	31	18	14	36	1.90
412420--425120	951	13.5	942	80	6	10623	30	18	14	36	1.90
418019--425120	476	14.9	477	84	3	8133	30	18	14	36	1.90
423515--424176	159	4.2	158	67	12	372	30	18	13	36	1.90
425426--425452	13	2.1	13	100	0	54	29	14	14	40	1.86
425407--425471	33	2.0	32	93	3	112	26	15	16	41	1.88
425436--425493	19	2.9	19	87	5	80	32	15	17	34	1.91
425522--425585	33	1.9	33	84	12	87	37	10	17	34	1.85
427439--427466	13	2.2	13	100	0	56	39	14	14	32	1.86
427417--427485	33	2.1	32	86	10	95	37	17	13	31	1.88
429286--429335	21	2.4	21	83	9	59	50	0	18	32	1.47
429293--429335	21	2.0	22	86	4	61	51	0	20	27	1.48
435515--435546	13	2.5	13	100	0	64	37	15	15	31	1.89
435938--435992	23	2.4	23	87	0	74	36	20	14	29	1.92
436525--437395	436	2.0	430	82	3	1066	31	18	13	36	1.90
437798--437822	10	2.5	10	100	0	50	20	16	0	64	1.30
438961--438986	13	2.0	13	100	0	52	30	15	15	38	1.88
441064--441106	20	2.1	20	86	4	59	9	30	44	16	1.79
441373--441419	21	2.3	21	82	10	62	44	4	19	31	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
441540--441578	13	3.0	13	88	0	60	38	15	15	30	1.88
448151--450006	476	3.9	476	86	2	2431	31	18	14	35	1.91
449993--450031	17	2.3	17	95	0	69	17	20	23	38	1.93
449823--450227	221	1.8	219	86	1	576	31	19	14	33	1.92
450036--451666	477	3.4	477	86	2	2218	30	19	14	35	1.92
451646--451683	17	2.2	17	95	0	67	21	21	23	34	1.97
451466--451879	221	1.9	219	85	3	571	32	20	14	32	1.93
450990--452355	697	2.0	696	88	1	2051	30	18	15	35	1.92
451686--453460	478	3.7	475	85	3	2348	30	18	14	36	1.91
456053--456128	27	2.8	28	90	6	111	23	32	21	22	1.98
456111--456282	52	3.3	50	82	9	184	29	26	12	31	1.93
456265--456341	28	2.8	28	86	4	93	23	35	19	22	1.96
458115--460257	473	4.5	475	84	3	2705	31	18	14	36	1.91

Tables:   1   2   3

The End!