genome.fa.s305.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold305
Parameters: 2 7 7 80 10 50 1000
Length:  704983

Tables:   1   2   3   4   5   

This is table  1  of  5  ( 600 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
4046--4127	28	2.9	28	80	10	80	26	17	31	24	1.97
4110--4277	52	3.3	51	83	2	219	32	9	26	32	1.88
4262--4337	27	2.8	28	87	2	100	19	21	35	23	1.96
4051--4443	211	1.9	211	88	2	592	30	12	27	29	1.94
6805--6830	13	2.0	13	100	0	52	38	15	15	30	1.88
6784--6850	33	2.0	33	88	0	98	43	16	14	25	1.86
6863--6930	19	3.9	18	76	23	83	38	14	11	35	1.83
6885--6909	13	1.9	13	100	0	50	32	16	16	36	1.90
6866--6928	32	2.0	32	96	0	117	36	15	12	34	1.86
26575--26634	13	4.6	12	81	10	57	63	0	1	35	1.05
26575--26629	25	2.1	27	90	6	87	63	0	1	34	1.05
28127--28202	39	1.9	40	86	2	109	35	3	3	56	1.36
28649--28681	14	2.4	14	94	0	57	63	0	0	36	0.95
28683--28751	29	2.4	30	77	15	74	56	2	1	39	1.23
28701--28741	10	4.1	10	84	9	57	60	0	0	39	0.96
29238--29304	29	2.3	30	82	14	88	44	0	0	55	0.99
29238--29301	13	4.7	13	74	24	60	45	0	0	54	0.99
29238--29289	15	3.5	15	73	21	56	46	0	0	53	1.00
29607--29656	21	2.5	20	86	3	64	18	4	2	76	1.04
30420--30467	17	2.8	17	75	9	53	14	8	12	64	1.49
30473--30507	14	2.6	13	86	8	52	31	2	0	65	1.07
30793--30864	29	2.5	29	81	4	83	40	5	6	47	1.54
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
31051--31076	2	13.0	2	100	0	52	50	0	0	50	1.00
32759--32797	2	19.5	2	100	0	78	48	0	0	51	1.00
33728--33771	15	2.9	15	80	10	54	65	0	0	34	0.93
34240--34319	24	3.3	24	79	11	83	50	2	1	46	1.23
34256--34321	24	2.7	25	86	6	91	51	1	1	45	1.19
36292--36322	13	2.4	13	94	0	53	35	12	16	35	1.87
36271--36338	33	2.0	34	88	8	104	35	17	13	33	1.89
36175--36401	97	2.4	97	94	0	402	32	17	16	34	1.92
36388--36455	19	3.8	19	72	23	67	38	16	16	29	1.90
36389--36451	32	1.9	32	90	3	99	39	14	17	28	1.89
36984--37068	19	4.7	19	87	11	133	28	38	3	29	1.73
36978--37068	34	2.5	35	87	8	139	31	36	3	28	1.74
36972--37068	19	5.4	19	83	10	114	31	36	3	28	1.73
38897--38924	13	2.2	13	100	0	56	42	14	14	28	1.84
44259--44318	24	2.5	24	84	10	70	63	6	3	26	1.35
55081--55137	24	2.7	20	80	19	78	29	19	10	40	1.85
55089--55137	24	2.0	24	100	0	98	30	20	8	40	1.81
55132--55190	20	3.0	20	97	0	109	40	13	15	30	1.86
55125--55150	13	2.0	13	100	0	52	38	15	15	30	1.88
55156--55369	95	2.4	84	79	17	270	34	16	17	32	1.92
55157--55347	95	2.0	95	93	2	330	33	15	17	32	1.92
55221--55283	31	2.0	32	87	9	94	33	15	15	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55315--55370	19	2.8	21	83	10	80	33	17	14	33	1.90
56220--56273	15	3.5	16	76	16	51	51	14	5	27	1.64
56272--56305	17	2.0	17	88	0	50	58	0	0	41	0.98
57714--57745	2	16.0	2	93	0	55	46	0	0	53	1.00
59061--59117	17	3.3	17	75	18	55	29	1	1	66	1.12
59060--59118	11	5.0	12	76	17	52	30	1	1	66	1.12
59128--59164	17	2.2	17	90	0	56	51	2	0	45	1.15
59212--59260	26	2.0	24	88	8	71	48	0	10	40	1.37
61552--61605	23	2.3	24	82	17	62	33	0	7	59	1.25
62889--62976	37	2.4	37	88	3	124	36	27	13	22	1.92
68365--68406	20	2.0	21	95	4	77	40	11	14	33	1.82
68416--68458	13	3.1	13	75	18	50	44	16	13	25	1.85
68510--68562	21	2.6	21	88	5	74	35	16	11	35	1.85
71041--71139	37	2.7	37	87	6	130	35	24	19	21	1.96
76451--76516	35	1.9	33	87	6	96	74	0	4	21	1.00
76463--76510	14	3.5	14	78	13	55	75	0	4	20	0.97
77153--77202	22	2.3	22	82	0	64	42	20	24	14	1.88
78592--79368	163	4.8	161	86	4	953	29	14	13	41	1.85
78628--79368	325	2.3	326	86	5	1011	30	14	13	41	1.85
81554--81874	167	1.9	167	87	3	468	27	14	13	44	1.82
82606--82640	13	2.8	12	87	12	52	8	0	2	88	0.61
83999--84055	25	2.5	22	86	13	73	21	12	21	45	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
84010--84059	25	2.0	25	100	0	100	24	12	16	48	1.79
86452--86506	19	3.0	19	76	10	53	56	0	0	43	0.99
86538--86589	17	3.0	17	77	2	59	40	0	0	59	0.97
86529--86600	37	1.9	38	86	8	103	44	0	1	54	1.08
87903--87953	24	2.0	26	85	7	70	33	1	11	52	1.49
90324--90350	2	13.5	2	100	0	54	48	0	0	51	1.00
93775--93825	27	1.9	27	88	4	77	29	19	31	19	1.97
96125--96196	20	3.6	19	75	7	72	40	9	13	36	1.78
96122--96199	40	2.0	39	89	2	120	39	11	12	35	1.80
97023--97103	16	5.1	16	79	5	74	9	12	32	45	1.75
97023--97104	32	2.5	31	75	7	83	9	13	31	45	1.76
97107--97191	44	1.9	45	85	2	118	21	12	25	40	1.89
98538--98588	15	3.2	15	70	24	50	3	29	3	62	1.31
98524--98588	33	2.0	33	96	0	121	6	29	3	61	1.35
98524--98576	18	3.1	18	67	25	51	7	28	1	62	1.33
100111--100339	117	2.0	114	91	4	370	37	17	8	35	1.81
101302--101371	2	35.5	2	81	8	81	51	4	1	42	1.30
102524--102630	42	2.6	40	77	5	97	29	17	19	32	1.95
104361--104428	33	2.1	33	88	0	100	42	1	10	45	1.47
106272--106316	2	22.5	2	100	0	90	0	48	0	51	1.00
106316--106347	2	16.0	2	100	0	64	50	0	0	50	1.00
107558--107643	27	3.1	28	73	11	79	43	3	2	51	1.31
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
107902--107927	3	8.7	3	100	0	52	65	0	0	34	0.93
108353--108392	5	8.0	5	88	0	62	37	2	0	60	1.11
109622--109655	2	17.0	2	100	0	68	50	0	0	50	1.00
110123--110170	19	2.5	19	72	0	51	37	0	0	62	0.95
111297--111321	2	12.5	2	100	0	50	52	0	0	48	1.00
112999--113032	16	2.0	18	88	11	54	47	0	0	52	1.00
113677--113709	2	16.5	2	100	0	66	48	0	0	51	1.00
113732--113773	22	1.9	22	85	0	57	35	9	0	54	1.33
114125--114159	2	17.5	2	100	0	70	48	0	51	0	1.00
116625--116674	26	2.0	25	88	4	73	28	2	0	70	0.99
135397--135552	63	2.5	61	80	9	163	42	24	13	19	1.87
138454--138527	21	3.5	21	70	14	71	29	24	14	31	1.95
138458--138551	42	2.2	42	84	0	116	29	23	15	30	1.96
139639--139721	41	2.0	41	100	0	166	26	24	7	42	1.80
140110--140150	3	14.0	3	89	5	66	68	2	0	29	1.03
145526--145550	2	12.5	2	100	0	50	52	0	48	0	1.00
145610--145640	16	1.9	16	93	0	53	48	29	12	9	1.73
145847--145904	16	3.6	16	73	2	62	50	24	12	13	1.76
155007--155041	10	3.5	10	92	7	54	62	0	0	37	0.95
155014--155072	9	6.4	9	76	9	57	57	0	0	42	0.98
155104--155133	14	2.1	15	93	6	53	33	0	0	66	0.92
155347--155555	62	3.2	63	80	15	230	51	0	2	44	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
155408--155559	36	4.2	36	81	10	159	53	0	2	43	1.19
155409--155545	71	1.9	72	91	4	224	51	0	2	44	1.21
155331--155572	133	1.8	132	84	10	332	54	0	2	42	1.18
156072--156130	28	2.1	28	96	0	109	25	11	0	62	1.29
157173--157355	34	5.4	34	88	0	260	25	7	26	39	1.83
157662--157724	19	3.3	19	90	0	90	28	17	19	34	1.94
161745--161929	34	5.5	34	88	0	264	25	7	26	40	1.82
162738--162770	17	2.0	16	94	5	57	54	0	0	45	0.99
162969--163024	20	2.6	22	77	11	62	50	25	1	23	1.59
167399--167445	2	23.5	2	100	0	94	48	0	0	51	1.00

Tables:   1   2   3   4   5