genome.fa.s305.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold305
Parameters: 2 7 7 80 10 50 1000
Length:  704983

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 600 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
295612--296266	55	11.8	54	66	20	236	24	24	14	36	1.93
295612--295749	52	2.6	52	82	3	159	25	23	15	34	1.95
295349--296135	266	3.0	266	99	0	1538	25	24	15	35	1.94
295777--296030	49	5.1	49	75	13	241	25	24	16	34	1.95
295787--295921	43	3.0	44	86	7	191	26	23	18	31	1.98
295878--296261	67	6.7	55	72	14	264	24	23	14	37	1.92
295878--296272	171	2.3	171	94	1	691	24	24	14	37	1.92
297033--297099	33	2.0	33	88	0	98	34	11	13	40	1.81
297053--297077	13	1.9	13	100	0	50	36	16	16	32	1.90
297140--297164	13	1.9	13	100	0	50	32	16	16	36	1.90
297173--297300	52	2.5	52	94	3	224	33	17	17	30	1.94
303633--303658	13	2.0	13	100	0	52	38	15	15	30	1.88
307405--307429	13	1.9	13	100	0	50	36	16	16	32	1.90
309473--309534	32	1.9	33	90	3	99	41	12	14	30	1.83
310313--310362	20	2.5	20	96	0	91	40	14	14	32	1.85
310379--310430	20	2.6	20	81	0	68	40	13	13	32	1.83
313772--313815	10	4.3	10	80	5	52	0	27	0	72	0.85
313775--313834	21	2.9	21	78	7	61	0	26	1	71	0.95
314924--314960	3	12.3	3	100	0	74	64	0	0	35	0.94
315485--315558	24	3.0	25	71	23	68	51	2	1	44	1.24
315477--315558	22	3.6	22	77	16	78	50	2	1	46	1.22
321463--321501	20	2.0	20	90	10	62	58	7	0	33	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
322181--322220	20	2.0	21	81	18	50	30	0	0	70	0.88
322187--322344	59	2.7	60	85	6	214	34	1	1	62	1.15
322240--322277	17	2.2	18	90	4	60	28	0	0	71	0.87
322189--322359	60	2.8	61	80	10	199	36	2	1	60	1.17
323473--323519	14	3.1	15	81	12	51	27	0	0	72	0.85
323483--323521	9	4.0	9	90	10	51	28	0	0	71	0.86
323475--323521	10	4.5	11	84	10	55	27	0	0	72	0.85
325004--325060	16	3.6	16	78	7	53	52	1	0	45	1.11
325004--325037	17	2.0	17	88	11	52	50	0	0	50	1.00
326258--326322	23	2.7	24	72	18	62	29	0	3	67	1.05
326266--326323	22	2.8	19	74	25	55	25	0	3	70	1.03
326277--326323	22	2.3	19	85	10	58	25	0	4	70	1.05
326298--326356	21	2.9	21	73	14	61	23	1	3	71	1.11
330731--330759	11	2.6	11	100	0	58	62	0	0	37	0.96
330977--331041	6	11.3	6	71	15	57	55	1	0	43	1.09
330975--331013	19	2.1	18	90	4	60	53	0	0	46	1.00
331000--331033	10	3.3	10	91	4	50	61	2	0	35	1.11
331461--331510	25	1.9	27	88	8	77	56	0	0	44	0.99
331465--331523	25	2.3	25	79	5	64	55	0	0	44	0.99
332458--332484	2	13.5	2	100	0	54	48	0	0	51	1.00
334922--334961	2	20.0	2	94	0	71	47	2	0	50	1.14
335943--335973	16	2.0	16	93	6	55	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
336950--336993	21	2.1	21	100	0	88	34	25	9	31	1.87
336955--337000	21	2.2	21	92	0	74	36	26	10	26	1.89
337975--338047	20	3.6	20	81	3	101	35	13	19	31	1.91
337993--338068	21	3.7	21	80	3	100	42	11	17	28	1.84
337975--338068	41	2.3	41	98	0	179	39	12	18	29	1.88
338107--338132	13	2.0	13	100	0	52	38	15	15	30	1.88
340344--340388	21	2.1	21	84	8	56	53	4	20	22	1.63
342192--342222	15	2.1	15	93	0	53	48	16	22	12	1.80
344247--344324	20	3.6	21	73	15	70	28	14	14	43	1.83
344313--344350	13	2.9	13	96	0	67	34	18	15	31	1.92
346794--346866	20	3.6	20	81	3	101	35	13	19	31	1.91
346812--346887	21	3.7	21	80	3	100	42	11	17	28	1.84
346794--346887	41	2.3	41	98	0	179	39	12	18	29	1.88
346926--346951	13	2.0	13	100	0	52	38	15	15	30	1.88
351439--351482	3	14.7	3	100	0	88	65	0	0	34	0.93
352887--352939	25	2.1	25	92	0	88	26	16	3	52	1.61
354782--354815	16	2.1	17	94	5	61	44	0	0	55	0.99
355328--355368	21	2.0	21	90	0	64	17	14	21	46	1.84
355594--355621	2	14.0	2	100	0	56	50	0	0	50	1.00
358066--358121	22	2.5	22	79	0	58	44	8	8	37	1.67
361209--361246	16	2.4	17	82	13	53	36	0	0	63	0.95
362742--362836	29	2.9	34	72	15	101	27	6	22	44	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
362821--362860	21	1.9	21	85	10	55	22	5	30	42	1.75
367960--368003	19	2.3	19	84	11	54	38	0	0	61	0.96
374698--374739	18	2.4	17	84	4	57	52	7	0	40	1.29
381408--381485	31	2.6	29	85	8	93	47	0	11	41	1.40
381436--381502	31	2.1	31	86	5	89	55	0	7	37	1.28
384339--384384	19	2.5	19	85	3	58	56	0	6	36	1.25
384573--384636	30	2.1	30	88	5	94	37	6	9	46	1.61
384987--385061	38	1.9	39	83	2	98	60	9	0	30	1.28
390511--390550	19	2.1	19	90	9	64	35	0	2	62	1.09
397177--397219	18	2.2	19	88	12	61	48	0	0	51	1.00
397089--397211	38	3.2	37	70	13	97	53	0	0	45	1.06
397450--397479	3	10.0	3	100	0	60	66	0	0	33	0.92
397610--397651	4	10.8	4	80	14	52	78	0	2	19	0.86
397609--397650	15	2.7	16	88	3	59	78	0	2	19	0.86
401262--401290	14	2.1	14	100	0	58	34	0	31	34	1.58
405299--405333	17	2.1	17	89	10	54	20	25	5	48	1.71
407198--407246	11	4.6	11	76	19	50	65	2	2	30	1.15
407769--407799	16	2.0	15	93	6	53	58	6	0	35	1.24
410224--410268	2	22.0	2	90	4	72	46	2	0	51	1.13
411784--411821	9	4.3	9	81	18	53	34	2	0	63	1.09
411905--411963	22	2.5	22	81	8	64	55	3	1	38	1.26
412013--412073	29	2.1	30	90	3	97	40	0	4	54	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
411988--412063	35	2.2	34	81	13	84	47	1	1	50	1.18
412013--412088	29	2.7	28	83	6	91	42	0	3	53	1.19
413011--413056	23	2.0	22	95	4	83	52	4	4	39	1.41
413352--413505	82	1.9	82	85	4	213	42	7	3	46	1.49
414258--414318	29	2.1	29	87	6	88	27	4	3	63	1.30
414506--414542	16	2.4	16	95	4	67	54	5	0	40	1.24
415137--415163	2	13.5	2	100	0	54	51	0	0	48	1.00
415447--415492	16	3.0	16	84	12	69	43	2	0	54	1.12
416904--416939	2	18.0	2	100	0	72	50	0	0	50	1.00
427439--427469	16	1.9	16	93	0	53	77	3	0	19	0.90
427930--427980	22	2.3	22	83	6	59	43	1	0	54	1.11
428375--428399	3	8.3	3	100	0	50	68	0	0	32	0.90
429316--429345	2	15.0	2	100	0	60	50	0	0	50	1.00
429252--429400	76	2.0	74	90	5	237	36	4	12	46	1.61
433992--434038	23	2.1	22	84	11	60	55	0	0	44	0.99
437918--437948	10	3.1	10	90	0	53	29	25	0	45	1.54
440104--440162	21	2.8	21	86	0	73	61	0	22	16	1.35
442513--442553	21	1.9	22	90	5	66	21	17	17	43	1.87
448250--449555	55	22.7	55	82	9	1286	26	27	20	25	1.99
448605--448693	26	3.3	26	63	17	63	25	30	20	23	1.98
448250--449547	400	3.2	398	88	4	1822	26	27	20	25	1.99
450341--450395	21	2.7	21	80	5	69	34	12	14	38	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
452840--453226	52	7.4	52	70	7	264	29	26	11	32	1.91
452947--453021	28	2.6	30	83	8	86	22	33	18	25	1.97
453160--453363	106	1.9	108	84	6	272	27	27	15	28	1.96
453240--453472	79	2.9	77	81	6	270	27	26	14	32	1.95
454589--454613	13	1.9	13	100	0	50	36	16	16	32	1.90
454680--454704	13	1.9	13	100	0	50	32	16	16	36	1.90
454713--454841	52	2.5	52	96	0	231	34	17	17	30	1.93
459514--459799	141	2.0	141	98	0	554	36	18	23	21	1.95
463378--464612	55	21.5	54	81	9	1200	26	27	20	25	1.99
463378--464612	171	7.2	168	81	11	1269	26	27	20	25	1.99

Tables:   1   2   3   4   5