genome.fa.s305.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold305
Parameters: 2 7 7 80 10 50 1000
Length:  704983

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 600 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
580368--580444	20	3.8	20	81	6	93	31	14	14	40	1.85
583365--583409	16	2.8	16	100	0	90	42	0	4	53	1.21
583961--584052	27	3.5	25	77	12	69	58	4	1	35	1.25
584013--584056	11	4.3	10	85	5	54	70	2	0	27	0.99
584474--584521	24	2.0	24	88	4	71	31	2	10	56	1.45
585214--585252	12	3.4	11	82	10	51	79	0	0	20	0.73
586364--586415	25	2.1	25	85	0	68	34	15	3	46	1.64
586969--587095	29	4.4	27	76	13	112	40	2	0	56	1.12
586996--587095	28	3.5	27	80	9	110	42	3	0	55	1.15
586974--587097	58	2.1	58	82	10	155	39	2	0	58	1.11
586971--587092	56	2.1	56	85	8	158	40	2	0	57	1.12
586971--587093	57	2.2	55	83	12	151	40	2	0	56	1.12
587246--587298	24	2.1	26	86	6	74	41	1	0	56	1.10
587246--587313	24	2.7	24	82	11	64	42	1	0	55	1.08
587305--587377	32	2.2	34	79	13	82	45	1	0	53	1.09
587314--587367	26	2.1	26	89	0	81	48	1	0	50	1.11
587411--587463	16	3.4	17	72	15	51	43	0	0	56	0.99
589190--589222	16	2.1	16	94	0	57	63	27	0	9	1.24
589413--589455	22	2.0	22	90	9	70	55	4	2	37	1.33
589916--589959	16	2.8	17	83	16	60	54	4	0	40	1.21
597219--597427	79	2.6	78	81	4	222	39	17	12	30	1.87
598357--598502	78	1.9	78	83	7	190	34	10	25	29	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
598436--598544	51	2.2	50	83	1	137	37	7	25	29	1.83
598358--598606	129	1.9	130	86	5	353	35	10	22	30	1.89
601089--601135	21	2.3	21	85	3	60	27	17	12	42	1.85
601422--601545	40	3.1	40	67	13	103	44	16	10	29	1.80
601644--601733	48	1.9	46	84	4	117	50	6	6	36	1.55
602557--602619	9	6.7	10	87	7	64	0	17	0	82	0.67
604537--604594	25	2.5	22	79	20	64	0	24	0	75	0.80
604538--604592	12	4.9	12	75	20	57	0	25	0	74	0.82
604540--604593	24	2.3	23	81	6	65	0	24	0	75	0.80
604974--605022	24	2.0	24	96	0	89	55	8	0	36	1.30
614330--614370	20	2.0	20	86	9	57	39	12	7	41	1.70
615157--615196	21	1.9	21	89	0	62	22	17	0	60	1.37
617256--617309	20	2.7	20	94	0	99	35	16	14	33	1.90
617739--617811	31	2.3	31	92	2	119	58	8	6	26	1.52
619039--619253	78	2.7	78	79	2	243	34	13	23	27	1.93
619183--619304	51	2.4	51	87	1	174	33	11	26	28	1.91
619111--619511	131	3.1	130	83	6	456	34	11	24	28	1.91
621824--621917	29	3.6	29	68	24	89	43	17	13	25	1.85
621805--621937	49	2.7	49	88	2	196	42	15	15	27	1.87
621906--622026	20	5.6	20	75	16	107	40	14	16	28	1.87
621857--622077	69	3.2	69	92	0	352	41	14	15	27	1.87
622709--622745	15	2.5	15	87	12	51	0	16	2	81	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
623237--623315	40	2.0	40	84	0	104	53	7	8	30	1.60
623283--623479	28	7.1	27	77	7	171	48	3	6	41	1.44
623290--623323	15	2.3	15	90	5	52	58	8	5	26	1.51
623277--623479	84	2.4	83	81	8	223	49	2	7	40	1.46
623416--623477	13	4.5	13	76	11	52	53	1	4	40	1.32
623277--623477	56	3.6	56	81	6	219	49	2	7	39	1.46
623857--623895	18	2.2	18	86	9	53	28	2	7	61	1.37
625335--625383	12	3.8	12	75	15	53	44	2	4	48	1.33
628916--629462	257	2.1	254	82	3	650	33	14	16	34	1.90
629936--630072	73	1.9	73	83	3	177	42	15	9	32	1.79
629927--630380	185	2.4	189	83	5	569	40	11	9	38	1.73
630097--630292	73	2.7	72	75	7	189	39	9	9	41	1.71
630181--630404	123	1.8	123	85	1	297	38	10	9	40	1.73
633570--633619	19	2.5	19	84	12	57	44	8	2	46	1.44
633606--633638	16	2.1	16	88	11	50	48	6	0	45	1.27
637594--637631	3	12.7	3	100	0	76	31	0	0	68	0.90
637791--637861	20	3.6	18	78	17	70	49	0	4	46	1.21
639457--639495	11	3.6	11	79	6	53	30	0	2	66	1.05
639770--639806	17	2.2	17	95	0	65	37	0	16	45	1.47
640870--640904	17	1.9	19	88	11	56	54	5	2	37	1.39
640928--640979	25	2.1	25	92	0	86	36	13	1	48	1.54
641498--641553	29	1.9	29	88	0	85	41	1	0	57	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
641712--641777	25	2.5	27	75	20	77	45	1	0	53	1.09
641719--641778	26	2.3	24	81	13	66	43	1	0	55	1.10
641879--641935	26	2.1	27	83	3	71	43	0	0	56	0.99
641773--642028	97	2.6	96	81	7	277	42	3	1	52	1.28
641976--642025	26	1.9	26	84	8	66	50	2	2	46	1.24
643205--643247	22	1.9	23	86	13	63	39	0	6	53	1.28
643580--643615	8	4.6	8	86	6	56	58	0	0	41	0.98
643832--643884	22	2.4	22	84	6	54	56	3	1	37	1.28
647159--647257	51	2.0	50	91	2	162	46	8	18	27	1.77
649244--649273	13	2.3	13	100	0	60	36	13	16	33	1.88
649319--649391	20	3.7	19	87	7	85	38	17	15	28	1.90
649942--649983	21	2.1	19	86	8	57	38	21	4	35	1.75
651869--651894	13	2.0	13	100	0	52	38	15	15	30	1.88
658455--658584	51	2.5	51	79	4	145	42	12	14	30	1.83
658619--658693	21	3.7	20	78	7	62	32	20	12	36	1.89
661818--662000	85	2.1	85	81	6	201	44	4	15	34	1.69
662590--662737	79	1.9	79	87	2	217	41	15	10	32	1.80
662697--662781	38	2.2	39	89	4	136	41	14	14	30	1.85
662956--663067	57	1.9	58	83	3	145	47	11	11	29	1.75
663102--663209	57	1.9	57	86	3	155	40	16	16	25	1.89
663214--663287	28	2.6	29	80	19	77	48	10	12	28	1.74
663777--663844	14	4.9	14	75	18	61	0	23	0	76	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
663775--663844	30	2.3	32	82	9	92	0	22	0	77	0.78
663780--663830	11	4.5	11	85	7	59	0	23	0	76	0.79
666868--666904	19	1.9	19	88	0	56	72	0	5	21	1.04
669068--669107	20	2.0	20	85	5	53	42	22	10	25	1.84
669096--669159	33	2.0	33	90	3	103	31	15	12	40	1.85
669207--669309	52	2.0	52	82	0	125	33	17	16	32	1.92
670889--670913	12	2.1	12	100	0	50	44	0	32	24	1.54
675366--675408	19	2.3	19	83	0	50	53	11	4	30	1.57
675373--675410	19	2.0	19	89	0	58	47	10	5	36	1.61
677139--677180	18	2.5	16	85	14	66	19	0	21	59	1.38
677144--677180	18	2.1	18	100	0	74	21	0	21	56	1.42
679126--679182	21	2.7	21	88	2	87	29	19	21	29	1.97
679353--679390	20	1.9	20	89	10	60	0	13	2	84	0.73
679880--680076	28	7.0	28	78	3	162	49	4	7	38	1.52
680965--681012	15	3.1	15	84	6	60	25	2	2	70	1.09
681208--681238	15	2.1	14	94	5	53	25	0	6	67	1.14
681359--681400	18	2.7	15	77	22	50	16	16	0	66	1.25
685543--686083	255	2.1	257	79	6	582	34	15	14	34	1.89
686653--686709	21	2.7	21	97	0	105	33	10	19	36	1.86
686765--686832	19	3.9	19	78	21	85	35	11	14	38	1.83
686786--686810	13	1.9	13	100	0	50	36	16	16	32	1.90
686767--686829	32	2.0	32	96	0	117	34	12	15	36	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
686872--686897	13	2.0	13	100	0	52	30	15	15	38	1.88
686852--686918	33	2.0	33	88	0	98	25	14	16	43	1.86
689314--689386	27	2.7	27	87	6	94	23	34	21	20	1.97
689369--689539	51	3.3	51	77	4	180	29	26	11	32	1.92
689522--689603	28	2.9	28	82	7	96	24	31	17	26	1.97
701995--702060	16	4.0	16	76	11	71	80	7	12	0	0.91
703208--703575	55	6.6	53	76	17	249	29	28	20	21	1.98
703210--703505	111	2.6	111	81	13	301	31	29	19	20	1.97
704258--704312	22	2.4	23	88	8	78	34	10	20	34	1.87
704482--704513	12	2.4	14	85	15	50	31	15	21	31	1.95

Tables:   1   2   3   4   5

The End!