genome.fa.s308.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold308
Parameters: 2 7 7 80 10 50 1000
Length:  505154

Tables:   1   2   3   4   

This is table  3  of  4  ( 407 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
294389--294423	17	1.9	19	88	11	56	82	2	8	5	0.91
294389--294446	31	1.9	30	85	3	80	82	1	10	5	0.89
295449--295487	14	2.8	14	92	0	60	38	5	25	30	1.78
295576--295600	13	1.9	13	100	0	50	36	16	16	32	1.90
296483--296567	29	2.9	30	84	7	111	29	28	7	35	1.83
298766--298825	21	2.9	21	79	20	72	20	25	1	53	1.55
298789--298832	21	2.1	21	83	8	54	20	27	0	52	1.47
301856--302066	88	2.4	88	80	3	244	23	17	11	47	1.80
302781--302989	78	2.7	78	89	3	314	33	25	11	29	1.92
302930--303262	92	3.6	91	86	2	416	30	27	11	30	1.92
303421--303521	44	2.3	43	84	5	130	20	24	13	40	1.89
303449--303625	94	1.9	93	80	8	207	20	22	15	42	1.89
304928--304978	20	2.5	21	72	15	54	23	5	5	64	1.38
304735--305272	162	3.3	166	83	6	598	31	10	8	49	1.66
307719--307774	20	2.7	20	86	10	69	28	16	12	42	1.84
309129--309549	146	2.9	145	83	3	469	26	20	17	35	1.95
309537--310388	149	5.7	150	80	6	778	26	20	17	34	1.95
309537--310389	299	2.8	298	79	4	892	26	20	17	34	1.95
314452--314530	20	4.0	20	84	0	113	49	11	7	31	1.67
315603--316018	57	7.3	56	84	7	466	23	16	30	29	1.96
315590--316018	85	5.0	85	83	7	494	23	17	30	29	1.97
315603--316017	28	14.6	28	82	6	471	23	16	30	29	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
316032--316099	13	5.2	13	69	13	59	36	17	10	35	1.84
317221--317245	13	1.9	13	100	0	50	32	16	16	36	1.90
317233--317285	20	2.6	21	82	8	65	37	15	18	28	1.91
317335--317360	13	2.0	13	100	0	52	38	7	15	38	1.76
317315--317382	33	2.1	32	86	8	93	38	13	16	32	1.87
318902--318932	3	10.3	3	92	0	53	35	0	35	29	1.58
323232--323262	8	3.8	8	95	4	53	12	0	25	61	1.32
323441--323491	13	3.9	13	92	0	84	31	13	17	37	1.89
323936--323980	20	2.2	20	84	8	54	24	48	22	4	1.68
325418--325461	21	2.0	22	95	4	81	36	0	27	36	1.57
326017--326041	13	1.9	13	100	0	50	32	16	16	36	1.90
326029--326122	20	4.6	21	79	11	106	38	17	17	27	1.91
326047--326121	21	3.6	21	82	10	109	38	16	17	28	1.91
326029--326122	41	2.3	41	100	0	188	38	17	17	27	1.91
326163--326230	33	2.1	32	86	8	93	35	16	16	32	1.91
326737--326794	13	3.9	13	73	26	53	36	17	13	32	1.89
326750--326814	20	3.6	20	73	26	81	40	18	12	29	1.87
326717--326817	33	3.1	33	94	1	168	36	17	13	31	1.89
332980--333018	13	3.0	13	92	0	69	30	20	15	33	1.94
333140--333186	22	2.3	19	85	10	58	34	17	4	44	1.68
334850--334936	37	2.4	37	96	0	156	36	5	26	31	1.80
335512--335536	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
335524--335576	20	2.6	21	84	3	72	39	15	16	28	1.89
335628--335652	13	1.9	13	100	0	50	32	16	16	36	1.90
349140--350086	61	15.4	60	81	9	954	24	26	19	30	1.98
349139--350088	186	5.1	184	84	6	1077	24	26	19	30	1.98
349139--350085	247	3.8	245	86	3	1242	24	26	19	30	1.98
350011--350240	105	2.2	105	92	0	388	23	30	19	27	1.98
350176--350775	45	13.4	45	76	11	495	19	27	12	39	1.88
350176--350817	134	4.8	134	87	1	876	20	27	12	40	1.88
350176--350817	269	2.4	268	86	2	914	20	27	12	40	1.88
351488--351543	21	2.7	21	100	0	112	32	25	14	28	1.94
351997--353004	521	1.9	521	100	0	2016	28	20	16	34	1.94
354301--354522	79	2.8	79	83	5	245	30	24	12	33	1.92
354458--354576	52	2.3	51	87	7	170	31	26	10	31	1.90
354557--354633	28	2.8	27	80	7	84	25	29	16	27	1.97
354661--354895	79	3.0	78	79	8	260	25	25	15	33	1.95
355929--356014	22	4.0	22	76	1	75	44	9	10	36	1.71
360864--360925	22	2.8	22	87	0	88	43	9	9	37	1.71
361344--361406	33	1.9	32	87	3	90	30	17	14	38	1.89
362598--362651	22	2.5	22	93	0	99	42	16	9	31	1.80
365173--365515	79	4.3	79	80	4	379	34	13	24	27	1.93
365202--365494	158	1.9	158	88	4	448	35	12	24	27	1.91
368717--368837	42	2.9	41	79	6	127	42	11	22	23	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
368728--368889	83	1.9	84	82	6	204	43	12	21	22	1.85
368710--368949	41	5.7	40	72	14	133	41	12	23	22	1.88
368771--369024	41	6.0	44	74	13	187	41	13	25	19	1.88
368874--369025	80	1.9	81	88	1	234	38	15	26	19	1.92
369029--369362	125	2.7	123	82	6	406	28	18	26	26	1.98
369029--369373	62	5.5	62	84	3	417	29	17	26	26	1.98
375589--375968	79	4.8	79	77	7	279	33	14	23	28	1.94
375655--375966	159	2.0	158	82	3	376	35	13	22	28	1.93
375903--376015	51	2.2	51	81	6	131	32	12	25	29	1.92
376052--376206	79	2.0	80	85	6	217	32	13	26	27	1.94
378507--378561	20	2.8	20	91	5	85	43	14	14	27	1.84
378587--378632	21	2.2	21	88	0	65	32	17	17	32	1.93
385202--385227	13	2.0	13	100	0	52	38	15	15	30	1.88
385180--385247	33	2.1	32	91	2	109	32	13	19	35	1.90
385316--385374	13	5.1	12	71	21	54	33	16	16	32	1.92
385299--385371	33	2.2	33	95	0	128	30	15	20	34	1.93
385315--385395	33	2.5	33	86	8	103	32	17	17	33	1.93
385929--385973	22	2.0	22	91	8	74	35	31	0	33	1.58
387818--387842	13	1.9	13	100	0	50	36	16	16	32	1.90
390484--390509	13	2.0	13	100	0	52	38	15	15	30	1.88
392724--392768	21	2.1	21	84	8	56	53	4	20	22	1.63
394572--394602	15	2.1	15	93	0	53	48	16	22	12	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
396616--396695	20	3.8	20	75	15	79	26	15	15	43	1.85
396681--396719	13	3.0	13	96	0	69	30	17	15	35	1.91
397402--397583	86	2.1	86	100	0	364	23	25	18	32	1.97
399348--399373	13	2.0	13	100	0	52	38	15	15	30	1.88
404043--404095	20	2.6	21	76	8	56	32	16	13	37	1.88
404083--404107	13	1.9	13	100	0	50	36	16	16	32	1.90
404117--404155	20	2.0	19	95	5	69	30	10	23	35	1.88
408269--408299	13	2.4	13	94	0	53	35	16	12	35	1.87
408342--408928	298	2.0	298	98	0	1129	37	19	12	30	1.89
411713--411755	21	2.0	21	86	0	59	23	6	0	69	1.12
412165--412221	21	2.8	20	81	5	69	40	15	14	29	1.87
412209--412345	53	2.6	53	95	1	238	37	18	17	26	1.93
412369--412399	10	3.1	10	90	0	53	22	29	6	41	1.78
412410--412439	14	2.2	14	94	5	53	26	23	6	43	1.78
416797--417119	81	4.0	81	77	7	239	28	26	10	34	1.89
416847--417242	81	4.9	80	75	7	304	28	26	11	33	1.91
417175--417297	52	2.4	54	87	5	182	32	23	12	31	1.91
417095--417374	132	2.1	132	85	1	373	31	24	11	32	1.90
417248--417415	80	2.1	80	85	2	221	30	25	10	34	1.89
418527--418583	3	19.0	3	92	0	96	31	0	3	64	1.10
418582--418633	3	17.3	3	87	0	77	32	1	34	30	1.69
419699--419766	33	2.1	33	88	2	102	36	16	16	30	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
425671--425701	8	3.8	8	95	4	53	16	0	22	61	1.34
425901--425936	13	2.8	13	91	0	54	36	16	13	33	1.89
430128--430158	13	2.4	13	100	0	62	38	12	16	32	1.86
430142--430192	20	2.5	20	87	6	68	33	13	15	37	1.87
431275--431326	26	2.0	26	96	0	95	44	3	25	26	1.71
435984--436323	29	11.4	30	75	8	182	25	31	12	30	1.93
436084--436277	60	3.2	59	82	7	223	26	32	13	26	1.94
436084--436308	89	2.5	90	80	7	251	26	32	13	28	1.94
436328--437051	62	11.6	62	77	6	696	25	21	17	35	1.95
436399--437207	120	6.4	121	77	9	646	25	21	17	35	1.95

Tables:   1   2   3   4