genome.fa.s308.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold308
Parameters: 2 7 7 80 10 50 1000
Length:  505154

Tables:   1   2   3   4   

This is table  4  of  4  ( 407 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
437015--437090	39	1.9	39	100	0	152	21	26	15	36	1.93
437062--437127	32	2.1	32	91	0	105	24	21	16	37	1.93
437094--437264	67	2.5	68	86	4	238	22	23	16	37	1.93
441911--441978	31	2.2	32	81	7	77	26	16	19	38	1.92
444133--444188	19	2.9	19	91	2	85	33	17	17	30	1.94
444173--444199	13	2.1	13	100	0	54	40	14	14	29	1.86
444790--444906	58	2.0	59	93	1	200	36	23	4	35	1.74
446315--446354	19	2.0	20	95	4	73	20	27	35	17	1.95
446948--446988	18	2.2	19	86	8	57	48	19	4	26	1.69
453106--453131	13	2.0	13	100	0	52	38	15	15	30	1.88
453118--453155	20	1.9	20	100	0	76	31	15	13	39	1.86
453169--453226	13	4.0	13	74	23	53	32	17	15	34	1.91
454980--455004	3	8.3	3	100	0	50	32	36	0	32	1.58
456659--456714	19	2.9	19	91	2	85	33	17	17	30	1.94
456699--456725	13	2.1	13	100	0	54	40	14	14	29	1.86
458139--458294	79	2.0	80	81	6	183	30	28	9	31	1.89
463104--463157	20	2.6	21	76	5	65	68	9	7	14	1.38
464176--464334	19	9.7	19	68	31	118	32	12	19	35	1.89
464226--464314	13	5.9	13	72	27	70	34	13	17	33	1.89
464177--464347	32	5.4	32	96	2	301	32	13	19	34	1.90
464177--464430	96	2.7	96	83	7	259	32	15	18	33	1.92
464386--464411	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
473383--473506	52	2.4	51	93	1	203	27	18	18	35	1.94
473383--473526	52	2.8	51	84	7	184	29	18	18	34	1.95
473515--473573	13	4.9	13	73	26	67	35	13	16	33	1.88
473515--473594	34	2.4	34	100	0	160	35	12	17	35	1.88
473614--473680	33	2.0	33	88	0	98	40	13	11	34	1.81
473636--473660	13	1.9	13	100	0	50	32	16	16	36	1.90
474550--474761	52	4.2	52	76	15	203	33	16	25	24	1.96
474657--474746	43	2.1	43	91	0	144	30	17	25	26	1.98
474752--475221	57	8.0	59	75	10	351	24	17	29	28	1.97
474752--475008	88	3.0	87	90	3	385	21	17	29	31	1.96
474750--475221	30	16.1	30	78	9	386	24	17	29	28	1.97
476659--476771	21	5.7	19	77	13	111	1	4	9	84	0.84
476666--476771	20	5.3	20	78	13	103	1	4	9	83	0.85
476672--476772	36	2.8	36	83	10	109	1	4	9	83	0.88
476659--476734	1	76.0	1	78	0	71	1	2	7	88	0.67
486461--486487	10	2.7	10	100	0	54	77	22	0	0	0.76
500776--500895	1	120.0	1	85	0	159	92	5	0	1	0.48
500777--500895	44	2.7	44	92	2	184	92	5	0	1	0.48
500775--500895	64	1.9	64	93	5	208	91	5	0	1	0.51
502332--502795	29	16.0	28	78	10	355	29	29	17	24	1.97
502801--502888	43	2.0	43	91	0	140	27	25	18	29	1.98
502842--502978	52	2.6	53	82	4	161	24	24	16	34	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
503815--503839	13	1.9	13	100	0	50	36	16	16	32	1.90
503901--503925	12	2.1	12	100	0	50	36	16	16	32	1.90
503913--504114	52	3.9	51	89	7	300	34	19	17	28	1.95

Tables:   1   2   3   4

The End!