genome.fa.s357.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold357
Parameters: 2 7 7 80 10 50 1000
Length:  802879

Tables:   1   2   3   4   5   6   

This is table  2  of  6  ( 658 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
134900--134931	15	2.1	15	100	0	64	18	12	12	56	1.67
135032--135058	7	3.9	7	100	0	54	44	11	0	44	1.39
137461--137495	2	17.5	2	100	0	70	51	0	0	48	1.00
138644--138706	16	4.1	16	73	21	53	33	0	0	66	0.92
140931--140981	3	17.0	3	100	0	102	33	0	0	66	0.92
143528--143571	21	2.1	21	91	0	70	38	0	0	61	0.96
145122--145207	30	2.9	29	80	11	93	41	5	1	51	1.33
145244--145305	30	2.1	30	85	11	83	54	4	4	35	1.43
145666--145726	32	1.9	32	86	6	88	49	8	16	26	1.73
146038--146093	2	28.0	2	100	0	112	50	0	0	50	1.00
146623--146679	21	2.7	21	76	15	64	38	0	0	61	0.96
148496--148521	3	8.7	3	100	0	52	34	34	30	0	1.58
149246--149301	16	3.4	16	77	22	55	44	0	0	55	0.99
150202--150228	2	13.5	2	100	0	54	48	0	0	51	1.00
150822--150865	21	2.1	21	91	0	70	47	13	4	34	1.63
151326--151430	19	5.2	19	70	22	63	57	0	0	41	1.05
151327--151416	29	2.9	30	73	19	87	60	0	0	40	0.97
151327--151415	43	2.0	46	82	10	114	60	0	0	39	0.97
151419--151473	14	3.8	14	76	7	56	43	0	0	56	0.99
151391--151466	29	2.6	29	79	6	73	46	0	1	52	1.08
152064--152129	28	2.4	28	78	16	75	51	0	0	48	1.00
152326--152373	24	2.0	24	84	8	62	37	0	0	62	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
152335--152375	19	2.3	19	83	8	59	36	0	0	63	0.95
152362--152404	16	2.6	16	85	3	50	51	0	0	48	1.00
152413--152447	17	2.0	18	94	5	63	54	0	0	45	0.99
152850--152891	22	2.0	21	85	4	57	47	0	0	52	1.00
153277--153347	27	2.6	27	84	6	90	22	5	23	47	1.72
155923--155968	21	2.1	22	84	4	58	34	19	26	19	1.96
157600--157665	27	2.4	27	90	7	98	22	7	22	46	1.77
158017--158055	19	2.1	18	85	4	51	46	2	0	51	1.14
159973--160012	11	3.7	11	90	3	55	70	2	0	27	1.01
161958--162000	22	2.0	22	86	9	61	60	2	0	37	1.10
162691--162717	3	9.0	3	100	0	54	66	0	0	33	0.92
169619--169665	20	2.3	20	96	0	85	53	4	4	38	1.40
171163--171247	42	2.0	42	93	0	143	40	17	11	30	1.86
177351--177391	19	2.3	19	79	8	50	43	0	0	56	0.99
177360--177442	18	4.7	18	75	8	53	50	0	0	49	1.00
177367--177416	17	2.9	18	77	14	52	48	0	0	52	1.00
177750--177784	16	2.2	16	94	0	61	28	0	0	71	0.86
177846--177901	15	3.4	16	79	16	62	48	0	0	51	1.00
177846--177903	17	3.5	17	79	11	59	48	0	0	51	1.00
177887--177927	9	4.6	9	84	9	57	63	0	0	36	0.95
177887--177936	17	2.7	19	81	15	68	60	0	2	38	1.09
179214--179260	13	3.6	13	85	5	60	57	6	2	34	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
179862--179897	2	18.0	2	94	0	63	52	0	0	47	1.00
188642--188671	15	2.0	15	93	0	51	50	0	3	46	1.18
189611--189673	18	3.4	19	77	12	60	73	0	9	17	1.09
190373--190425	16	3.3	16	76	10	54	43	1	5	49	1.37
190988--191027	21	1.9	21	85	10	55	37	0	2	60	1.11
192716--192774	23	2.6	23	86	2	75	40	1	0	57	1.09
193932--194000	21	3.2	21	66	22	61	43	2	2	50	1.32
193929--194016	44	2.0	44	100	0	176	47	2	2	47	1.27
193943--194011	21	3.2	21	65	15	59	46	2	1	49	1.25
193940--194038	44	2.2	44	85	3	128	51	6	2	40	1.38
210588--210683	48	2.0	49	89	6	151	35	6	15	42	1.72
229093--229122	15	2.0	15	93	0	51	50	0	3	46	1.18
230056--230110	18	2.8	19	78	8	58	70	0	9	20	1.13
230807--230859	16	3.3	16	76	10	54	43	1	5	49	1.37
231421--231460	21	1.9	21	85	10	55	37	0	2	60	1.11
231850--231910	23	2.7	21	75	20	59	57	3	4	34	1.36
233140--233200	23	2.7	23	87	2	79	40	1	0	57	1.08
233151--233206	13	4.5	13	71	13	55	42	1	0	55	1.10
234351--234419	21	3.2	21	66	22	61	43	2	2	50	1.32
234348--234435	44	2.0	44	100	0	176	47	2	2	47	1.27
234362--234430	21	3.2	21	65	15	59	46	2	1	49	1.25
234359--234457	44	2.2	44	85	3	128	51	6	2	40	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
251010--251106	49	2.0	49	91	0	158	35	6	16	42	1.73
253189--253219	5	6.2	5	92	0	53	22	3	0	74	0.96
253284--253363	34	2.2	36	76	14	85	53	2	0	43	1.14
255678--255720	18	2.3	19	92	8	70	51	0	0	48	1.00
255842--255881	21	2.0	20	85	5	53	45	0	0	55	0.99
263509--263535	7	3.9	7	100	0	54	25	0	0	74	0.83
263943--264043	29	2.9	35	75	22	106	56	0	0	43	0.99
263943--264052	32	3.3	33	79	12	102	57	0	0	42	0.98
264000--264057	18	3.2	17	75	17	55	60	0	0	39	0.97
263970--264032	23	2.7	23	76	13	67	55	0	0	44	0.99
264020--264096	18	4.2	19	72	20	65	59	0	5	35	1.20
263949--264083	37	3.9	35	75	15	102	57	0	2	40	1.11
264009--264057	16	2.8	16	79	14	53	61	0	0	38	0.96
264716--264835	8	14.8	8	66	24	56	59	0	1	38	1.13
264713--264826	27	3.9	28	73	18	90	58	0	0	39	1.10
264725--264835	20	5.8	18	70	22	66	58	0	1	38	1.15
264767--264819	20	2.8	20	86	11	67	54	0	0	45	0.99
266055--266096	19	2.2	19	86	0	57	40	4	4	50	1.45
267950--268015	29	2.4	27	77	20	66	51	3	1	43	1.26
268833--268878	24	1.9	24	86	8	67	52	0	8	39	1.33
268638--268886	129	1.9	126	84	6	322	55	4	8	31	1.48
269428--269468	22	2.0	21	85	9	57	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
269887--269924	16	2.4	16	91	4	60	39	0	0	60	0.97
269950--269997	21	2.3	21	82	13	55	45	2	4	47	1.33
273657--273960	152	2.0	152	98	0	581	26	17	16	39	1.91
288758--288827	2	35.0	2	91	0	104	44	0	5	50	1.26
288958--288992	2	18.0	2	94	5	63	48	0	0	51	1.00
292915--292959	2	22.5	2	100	0	90	48	0	0	51	1.00
294834--294883	18	2.9	18	77	11	52	44	0	0	56	0.99
294847--294979	14	10.1	14	66	26	51	38	0	1	59	1.12
294901--294944	11	3.9	11	83	16	63	29	0	0	70	0.88
294891--294946	23	2.5	23	85	2	60	30	1	3	64	1.21
294902--294944	17	2.5	18	81	11	54	30	0	0	69	0.88
294935--294973	12	3.0	14	78	21	57	46	0	0	53	1.00
309370--309410	17	2.4	18	88	8	59	56	0	0	43	0.99
310123--310153	16	1.9	16	93	0	53	67	6	0	25	1.14
310217--310262	23	2.0	23	86	4	65	56	0	0	43	0.99
310229--310259	15	2.1	15	93	0	53	58	0	0	41	0.98
311492--311531	16	2.7	15	81	11	55	52	0	0	47	1.00
312455--312539	30	2.8	30	74	10	75	56	1	3	38	1.24
313638--313669	2	16.0	2	100	0	64	50	0	0	50	1.00
314532--314610	36	2.3	33	83	14	97	49	0	1	49	1.09
315022--315046	13	1.9	13	100	0	50	56	0	0	44	0.99
316313--316349	15	2.4	17	86	13	53	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
316313--316357	15	2.9	16	81	15	51	42	0	0	57	0.98
316724--316779	20	2.6	22	75	18	64	35	1	0	62	1.06
318337--318376	3	13.3	3	94	0	71	37	0	0	62	0.95
319420--319474	18	3.0	19	84	10	62	54	0	0	45	0.99
319440--319474	18	2.0	18	94	5	63	62	0	0	37	0.95
319710--319756	18	2.6	18	77	12	51	42	2	0	55	1.12
320467--320530	20	3.0	21	74	14	60	64	0	0	35	0.94
320481--320533	27	2.0	27	88	0	79	67	0	0	32	0.91
323616--323695	24	3.0	28	75	22	91	65	0	1	33	1.01
323616--323792	27	6.3	27	73	16	103	59	0	1	38	1.12

Tables:   1   2   3   4   5   6