genome.fa.s357.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold357
Parameters: 2 7 7 80 10 50 1000
Length:  802879

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 658 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
729960--730017	19	3.0	20	87	2	82	36	13	15	34	1.87
729962--730017	20	2.8	20	89	2	78	35	12	16	35	1.86
732477--732522	4	11.5	4	88	0	65	54	0	19	26	1.44
733308--733366	2	29.0	2	96	3	109	49	1	0	49	1.11
734512--734562	2	24.5	2	92	7	84	49	3	0	47	1.20
735084--735125	3	14.0	3	100	0	84	66	0	0	33	0.92
735217--735271	2	28.0	2	96	3	103	50	0	0	49	1.00
740263--740333	29	2.5	27	82	14	90	63	5	5	25	1.39
740938--741010	20	3.6	20	74	20	62	50	1	0	47	1.09
740939--741003	16	4.7	14	71	24	50	49	1	0	49	1.10
741139--741176	18	2.1	18	85	9	51	52	5	0	42	1.24
742823--742866	3	14.7	3	100	0	88	65	0	0	34	0.93
743028--743129	50	2.0	51	88	1	152	46	10	12	30	1.76
743518--743568	25	2.0	25	92	0	84	64	7	0	27	1.21
749345--749450	56	1.9	56	84	3	142	48	11	13	27	1.76
752631--752655	2	12.5	2	100	0	50	52	0	0	48	1.00
754352--754407	19	2.9	19	89	2	76	33	19	16	30	1.94
754392--754451	13	5.1	13	73	22	69	41	15	15	28	1.86
754404--754470	20	3.7	20	74	25	85	43	14	14	26	1.85
754373--754470	33	3.0	33	93	1	162	40	15	16	27	1.88
757017--757385	191	1.9	191	100	0	738	27	16	12	44	1.83
763020--763084	20	3.2	20	86	2	76	43	7	15	33	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
763132--763185	20	2.6	21	82	2	65	35	14	16	33	1.90
763232--763301	20	3.5	20	78	9	79	30	17	10	42	1.81
763150--763347	93	2.1	93	89	0	297	29	17	13	40	1.87
763231--763278	21	2.3	20	85	3	69	35	14	10	39	1.80
765437--765543	52	2.1	52	89	7	164	30	6	28	33	1.83
768329--768460	70	1.9	70	84	6	178	37	12	25	24	1.91
768358--768488	70	1.9	70	85	3	183	35	15	22	25	1.94
768487--768912	65	6.5	65	76	8	348	34	15	22	26	1.94
768470--768804	131	2.6	127	81	6	408	34	16	21	27	1.95
770438--770470	14	2.4	14	100	0	66	42	12	6	39	1.67
774951--774987	20	1.9	20	94	5	67	29	10	13	45	1.77
775043--775068	13	2.0	13	100	0	52	30	15	15	38	1.88
776155--776203	9	5.8	8	79	11	53	4	10	2	83	0.85
776155--776203	17	2.9	16	79	11	53	4	10	2	83	0.85
780300--782181	498	3.9	478	89	2	2716	39	15	17	26	1.90
782970--783046	20	3.8	20	77	6	84	41	11	15	31	1.83
782924--783093	90	1.9	91	90	1	270	42	11	17	29	1.83
789162--789285	52	2.4	51	93	1	203	29	17	18	34	1.94
789162--789305	52	2.8	52	86	5	177	30	17	18	33	1.94
789294--789318	13	1.9	13	100	0	50	36	16	16	32	1.90
789359--789425	33	2.0	33	88	0	98	40	13	11	34	1.81
789381--789405	13	1.9	13	100	0	50	32	16	16	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
790123--790733	49	12.2	49	73	18	415	32	17	25	25	1.96
790401--790526	66	1.9	66	98	0	243	30	19	23	26	1.98
790290--790624	164	2.0	164	81	10	394	32	17	25	24	1.96
790280--790673	213	1.8	210	84	6	533	32	17	25	24	1.96
790238--790722	262	1.8	258	86	5	686	32	17	25	24	1.96
790733--790802	33	2.1	35	94	5	126	20	17	37	25	1.94
790787--791071	63	4.1	70	84	10	324	30	11	36	21	1.89
790787--791076	34	8.4	35	85	11	338	31	11	35	21	1.89
790910--791100	34	6.0	29	77	19	152	29	13	34	22	1.93
790945--791100	63	2.5	64	89	5	246	29	14	33	23	1.93
792544--792669	1	126.0	1	78	0	99	2	2	8	86	0.74
792544--792662	33	3.7	32	85	8	145	2	2	9	85	0.78
792544--792669	34	3.7	32	80	14	121	2	2	8	86	0.74
802351--802377	10	2.7	10	100	0	54	77	22	0	0	0.76

Tables:   1   2   3   4   5   6

The End!