genome.fa.s357.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold357
Parameters: 2 7 7 80 10 50 1000
Length:  802879

Tables:   1   2   3   4   5   6   

This is table  3  of  6  ( 658 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
324955--324994	19	2.0	20	95	4	73	67	2	0	30	1.04
325367--325440	38	2.0	37	84	7	96	47	4	1	47	1.29
325717--325756	2	20.5	2	89	5	64	55	0	0	45	0.99
326191--326236	21	2.2	20	88	7	65	45	2	0	52	1.13
326238--326281	22	1.9	24	90	9	74	61	0	0	38	0.96
328601--328642	17	2.4	17	92	4	66	85	0	14	0	0.59
328974--329015	22	1.9	22	90	9	68	38	0	0	61	0.96
331220--331292	37	2.0	37	81	10	87	56	2	2	38	1.28
331967--331997	16	1.9	16	93	0	53	38	0	0	61	0.96
335450--335498	14	3.4	15	76	18	59	63	0	0	36	0.95
344983--345024	20	2.0	21	86	4	59	61	4	4	28	1.36
357145--357191	13	3.7	13	81	16	62	44	0	0	55	0.99
357140--357210	25	2.7	26	80	6	81	45	0	1	53	1.09
357152--357232	25	3.1	25	74	13	74	45	0	1	53	1.08
358475--358535	5	12.4	5	74	8	54	67	0	0	32	0.91
358475--358537	26	2.6	24	85	7	83	68	0	0	31	0.90
358478--358532	9	6.0	10	72	20	57	67	0	0	32	0.91
358476--358563	27	3.5	24	76	17	81	64	0	1	34	1.01
359597--359629	16	2.0	17	88	5	50	57	0	0	42	0.98
366854--366924	30	2.3	31	87	2	99	29	12	21	36	1.90
368085--368166	31	2.6	31	78	0	92	28	10	20	40	1.86
369405--369433	2	14.5	2	100	0	58	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
370520--370564	23	2.0	23	82	8	56	48	4	6	40	1.49
370968--371007	20	2.0	21	85	9	57	75	2	0	22	0.93
370973--371007	11	3.3	11	92	4	54	77	0	0	22	0.78
371415--371449	5	7.0	5	96	0	61	82	0	17	0	0.66
371742--371806	29	2.2	30	94	2	114	41	0	3	55	1.15
372836--372872	13	3.2	12	78	21	51	51	0	0	48	1.00
373718--373754	18	2.0	20	89	10	60	37	0	0	62	0.96
373749--373787	20	1.9	21	89	5	62	61	0	0	38	0.96
374432--374471	22	1.9	20	85	10	53	62	0	0	37	0.95
374432--374471	20	2.0	21	85	14	57	62	0	0	37	0.95
376707--376785	16	4.2	19	76	20	69	40	2	1	55	1.21
380327--380406	39	2.2	35	82	8	88	55	0	0	45	0.99
380542--380587	3	15.3	3	100	0	92	67	0	0	32	0.91
381079--381156	35	2.2	36	88	2	113	51	5	8	34	1.56
381106--381165	23	2.7	23	76	2	59	50	6	6	36	1.55
381192--381227	18	2.1	17	94	5	63	47	5	8	38	1.57
382311--382343	2	17.0	2	93	6	59	48	0	0	51	1.00
383669--383727	25	2.3	25	78	21	68	33	11	1	52	1.48
384133--384173	2	20.5	2	100	0	82	51	0	0	48	1.00
385577--385619	2	21.5	2	90	0	68	51	0	2	46	1.13
386835--386880	15	3.1	15	93	0	74	41	0	0	58	0.98
387056--387083	5	5.6	5	100	0	56	17	0	0	82	0.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
387315--387344	13	2.3	13	94	0	51	50	0	3	46	1.18
387337--387369	17	2.0	17	94	5	59	27	0	0	72	0.85
387340--387403	20	3.4	18	74	16	58	26	0	1	71	0.94
387345--387395	20	2.4	22	84	15	72	29	0	1	68	1.00
388588--388649	20	3.1	19	81	13	63	45	0	0	54	0.99
389892--389926	2	17.5	2	100	0	70	51	0	0	48	1.00
390589--390629	14	2.9	14	85	7	57	53	0	2	43	1.13
391510--391551	11	3.9	11	84	15	52	40	0	0	59	0.97
391514--391551	20	1.9	20	94	0	67	39	0	0	60	0.97
393415--393495	32	2.4	34	80	10	96	45	0	0	54	0.99
394163--394204	17	2.4	18	92	4	68	69	0	0	30	0.89
394151--394210	17	3.5	17	79	18	63	60	0	0	40	0.97
394622--394646	5	5.0	5	100	0	50	80	0	0	20	0.72
395060--395086	2	13.5	2	100	0	54	48	0	0	51	1.00
397196--397242	20	2.4	20	82	3	51	53	10	4	31	1.55
399131--399163	2	16.5	2	93	0	57	48	0	0	51	1.00
401532--401556	13	1.9	13	100	0	50	56	12	0	32	1.36
402455--402492	3	12.7	3	89	10	60	63	0	0	36	0.95
403959--403988	2	15.0	2	92	0	51	46	0	0	53	1.00
404162--404205	3	14.7	3	100	0	88	68	0	0	31	0.90
406359--406417	23	2.7	21	75	10	55	50	5	0	44	1.24
406431--406469	18	2.1	19	90	4	62	48	2	0	48	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
411029--411071	22	2.0	22	86	4	61	27	0	4	67	1.10
411297--411339	7	6.1	7	78	10	52	46	0	0	53	1.00
411292--411337	20	2.4	19	82	7	58	47	0	0	52	1.00
411288--411348	28	2.2	28	83	11	81	49	1	0	49	1.10
411289--411334	23	2.1	21	88	8	65	50	0	0	50	1.00
420007--420068	30	2.1	30	84	3	81	19	20	19	40	1.92
421063--421116	25	2.2	26	77	16	60	42	1	0	55	1.10
421110--421145	11	3.3	11	88	0	54	36	0	0	63	0.94
421157--421205	20	2.5	18	78	18	53	67	0	0	32	0.91
428919--428954	15	2.4	16	86	13	51	36	0	0	63	0.94
429321--429400	28	2.8	29	81	10	94	31	1	0	67	0.99
429343--429399	10	5.8	10	78	21	59	29	0	0	70	0.88
430097--430128	2	16.0	2	100	0	64	50	0	0	50	1.00
432051--432101	15	3.2	15	74	20	50	39	0	1	58	1.09
432060--432115	23	2.4	23	79	5	60	44	0	1	53	1.11
432391--432416	2	13.0	2	100	0	52	50	0	0	50	1.00
434415--434468	3	18.0	3	100	0	108	66	0	0	33	0.92
435336--435366	13	2.3	14	88	11	55	51	0	0	48	1.00
436757--436801	2	22.5	2	100	0	90	51	0	0	48	1.00
437170--437217	19	2.6	18	83	6	60	47	0	0	52	1.00
437166--437241	18	4.6	17	71	18	63	50	0	0	50	1.00
437387--437429	14	3.0	14	80	16	52	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
438368--438399	13	2.3	15	89	10	50	59	0	0	40	0.97
438399--438438	19	2.1	19	90	0	62	37	0	0	62	0.95
438886--438925	21	1.9	21	90	10	64	60	2	0	37	1.11
440305--440329	13	1.9	13	100	0	50	16	0	0	84	0.63
442211--442261	16	3.4	14	76	12	57	47	0	3	49	1.20
442200--442258	23	2.7	23	77	15	70	45	0	3	50	1.18
446593--446653	29	2.1	29	87	0	86	37	6	22	32	1.80
448305--448354	24	2.1	23	82	10	57	42	0	6	52	1.26
450261--450324	22	2.8	23	73	21	64	57	0	0	42	0.98
450254--450316	21	2.8	21	83	16	65	58	0	1	39	1.07
450579--450624	19	2.3	20	81	3	58	45	2	0	52	1.13
450756--450812	24	2.4	24	76	8	71	45	0	1	52	1.11
450908--450938	3	10.3	3	100	0	62	32	0	0	67	0.91
451769--451807	19	2.1	19	85	9	53	48	0	0	51	1.00
452151--452179	2	14.5	2	100	0	58	51	0	0	48	1.00
452807--452843	12	2.8	14	80	16	51	45	0	0	54	1.00
453353--453420	23	2.9	22	76	10	64	47	0	0	52	1.00
453667--453715	25	2.0	25	84	4	64	38	2	0	59	1.09
454055--454084	15	2.1	15	93	6	53	26	6	6	60	1.47
454075--454185	6	18.0	6	69	20	52	36	0	0	62	1.02
454076--454186	8	13.5	8	66	25	54	37	0	0	61	1.02
454061--454196	15	9.5	15	70	17	67	37	1	0	60	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
454061--454185	10	12.5	11	66	23	62	36	1	0	61	1.11
454150--454196	14	3.4	14	82	5	60	40	0	0	59	0.97
454085--454211	35	3.7	34	76	9	96	40	0	0	58	1.04
454978--455079	36	2.9	36	81	13	113	61	1	0	35	1.14
455048--455107	30	2.1	30	84	9	81	65	1	0	33	1.03
455101--455141	11	3.6	11	90	6	64	58	2	0	39	1.11
455075--455141	23	2.9	23	82	4	64	62	1	0	35	1.04
456661--456711	2	26.0	2	82	11	61	45	0	3	50	1.20
457474--457510	19	2.0	19	89	5	58	40	0	8	51	1.32
457625--457786	79	2.1	79	98	0	315	48	3	8	39	1.50

Tables:   1   2   3   4   5   6