genome.fa.s357.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold357
Parameters: 2 7 7 80 10 50 1000
Length:  802879

Tables:   1   2   3   4   5   6   

This is table  5  of  6  ( 658 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
576601--576633	17	2.1	16	88	11	50	42	0	0	57	0.98
577633--577669	3	12.3	3	94	0	65	64	2	0	32	1.07
579740--579768	2	14.5	2	100	0	58	51	0	0	48	1.00
581736--581779	12	3.8	12	87	6	72	29	0	0	70	0.88
581740--581783	23	1.9	23	100	0	88	29	0	0	70	0.88
581736--581802	11	5.7	11	76	15	55	32	0	1	65	1.02
581736--581790	23	2.4	23	85	11	85	29	0	1	69	0.99
583500--583530	15	2.1	14	94	5	53	61	0	0	38	0.96
596711--596746	15	2.5	14	91	8	63	36	11	0	52	1.37
601084--601123	20	2.0	20	85	9	55	47	2	2	47	1.29
603125--603185	26	2.4	25	81	13	70	44	1	1	52	1.20
603857--603914	31	2.0	31	83	16	79	43	0	0	56	0.99
605363--605446	31	2.7	31	80	8	75	42	2	4	50	1.36
606048--606098	20	2.7	20	82	14	63	66	3	0	29	1.09
606121--606676	163	3.4	163	86	4	710	50	7	10	32	1.64
608553--608583	11	2.7	11	95	5	53	35	9	3	51	1.51
609917--609951	2	17.5	2	100	0	70	48	0	0	51	1.00
610919--610959	10	4.2	10	82	17	50	29	0	0	70	0.87
610933--610997	22	3.0	22	67	22	55	24	0	6	69	1.11
622202--622252	15	3.4	14	79	15	50	60	3	1	33	1.26
622223--622263	16	2.7	15	88	3	55	56	2	0	41	1.13
627860--627950	19	4.9	19	77	10	91	35	0	2	62	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
627867--627966	36	2.7	38	77	14	104	34	0	2	64	1.05
627915--627963	11	4.7	11	80	14	59	30	0	0	69	0.89
627915--627974	30	2.0	30	90	0	93	31	0	0	68	0.90
627901--627959	19	3.2	19	71	21	54	28	0	0	71	0.87
628589--628629	15	2.8	14	85	10	55	31	2	0	65	1.05
628589--628629	7	5.6	7	86	11	55	31	2	0	65	1.05
628602--628635	15	2.3	15	89	0	50	29	0	0	70	0.87
628794--628834	19	2.2	20	86	8	59	65	0	0	34	0.93
629951--629978	12	2.3	12	100	0	56	21	0	0	78	0.75
630276--630305	6	5.0	6	100	0	60	66	0	0	33	0.92
632481--632532	11	5.3	10	82	17	56	73	0	15	11	1.11
632901--632925	6	4.2	6	100	0	50	16	16	52	16	1.76
634468--634515	15	2.9	16	82	17	55	50	4	0	45	1.21
638108--638141	15	2.3	15	89	0	50	52	14	0	32	1.42
642001--642037	2	18.5	2	88	0	56	45	0	5	48	1.25
643570--643626	19	3.1	18	76	18	64	71	0	0	28	0.86
643570--643626	17	3.1	17	77	22	62	71	0	0	28	0.86
643585--643622	9	3.8	10	86	10	51	76	0	0	23	0.79
643570--643627	20	3.1	19	72	23	59	70	0	0	29	0.87
643624--643667	20	2.2	20	91	0	70	50	0	0	50	1.00
643580--643675	20	4.8	20	71	15	67	62	0	0	37	0.95
643616--643706	28	3.3	29	76	16	70	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
643594--643703	6	16.1	7	70	19	56	59	0	0	40	0.98
643823--643862	3	13.3	3	100	0	80	67	0	0	32	0.91
644292--644364	36	2.0	36	100	0	146	34	13	32	19	1.91
644504--644532	5	5.8	5	100	0	58	17	0	0	82	0.66
645424--645454	2	15.5	2	100	0	62	48	0	0	51	1.00
646483--646517	2	17.5	2	100	0	70	48	0	0	51	1.00
648343--648385	21	2.0	23	90	9	72	46	2	0	51	1.13
648595--648623	3	9.7	3	100	0	58	34	0	0	65	0.93
649339--649370	12	2.6	13	85	14	50	53	3	0	43	1.16
650278--650314	19	1.9	19	88	0	56	29	0	10	59	1.31
650339--650372	16	2.1	16	88	5	50	58	0	5	35	1.22
652449--652505	29	2.0	29	100	0	114	45	10	5	38	1.61
652685--652740	23	2.5	22	85	5	69	51	0	0	48	1.00
652685--652753	21	3.2	21	87	4	84	52	0	0	47	1.00
653187--653448	130	2.0	131	81	8	305	37	14	27	20	1.92
654040--654086	9	5.4	9	85	10	53	48	0	2	48	1.13
654041--654086	16	2.7	18	83	10	60	47	0	2	50	1.13
656203--656246	19	2.2	20	80	16	54	31	0	2	65	1.05
656254--656308	18	3.1	18	82	15	69	54	1	9	34	1.43
656983--657046	21	3.0	21	80	8	67	57	1	0	40	1.08
656967--657026	33	1.9	30	86	10	84	55	0	0	45	0.99
657003--657044	22	1.9	22	90	9	68	61	2	0	35	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
660913--660946	18	2.0	17	88	11	52	8	14	0	76	1.01
665976--666011	18	2.0	18	89	10	56	27	19	19	33	1.96
668839--668864	2	13.0	2	100	0	52	50	0	0	50	1.00
670900--670960	31	2.0	31	93	0	104	29	9	13	47	1.74
672398--672485	28	3.2	28	73	19	78	38	1	1	59	1.13
672414--672485	27	2.6	25	79	18	65	38	1	1	58	1.15
673590--673657	30	2.2	31	92	2	111	36	13	13	36	1.83
677729--677834	26	4.2	26	71	17	71	45	0	0	53	1.06
677781--677834	20	2.7	20	82	0	63	48	0	0	51	1.00
680391--680449	16	3.6	17	71	17	61	38	0	0	61	0.96
680428--680460	11	3.0	11	90	0	57	33	0	0	66	0.92
681331--681373	18	2.3	18	84	11	52	62	0	0	37	0.95
681338--681373	18	2.1	17	90	10	56	58	0	0	41	0.98
681345--681399	18	2.9	18	79	10	65	49	0	0	50	1.00
681487--681608	34	3.6	33	76	2	118	28	3	22	45	1.68
686031--686072	22	1.9	22	90	0	66	16	9	23	50	1.75
686055--686186	34	3.9	33	84	3	165	25	6	25	43	1.77
686053--686201	67	2.2	68	92	1	246	23	5	26	44	1.75
686659--686729	22	3.2	22	84	13	85	53	0	1	45	1.09
687444--687495	2	26.5	2	84	3	70	48	1	3	46	1.31
687725--687749	12	2.1	12	100	0	50	60	0	8	32	1.26
689712--689740	15	2.0	15	93	6	51	48	20	6	24	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
690005--690051	18	2.6	19	77	12	55	34	8	0	57	1.29
690944--690991	22	2.2	21	85	10	62	41	10	0	47	1.37
692034--692064	4	7.8	4	92	0	53	22	3	0	74	0.96
692690--692732	20	2.3	19	84	8	52	58	0	2	39	1.11
693306--693361	21	2.8	21	82	17	66	37	3	0	58	1.15
693330--693377	17	2.7	18	84	12	64	29	0	2	68	1.01
693324--693412	41	2.2	41	84	8	110	26	0	4	68	1.08
693325--693420	29	3.2	28	70	20	70	28	1	4	66	1.16
699031--699064	2	17.0	2	100	0	68	50	0	50	0	1.00
699512--699618	55	1.9	55	83	7	137	52	0	0	47	1.00
699589--699619	10	3.1	10	95	0	53	51	0	0	48	1.00
700839--700864	13	2.0	13	100	0	52	38	15	15	30	1.88
700820--700884	32	2.0	33	87	3	96	41	16	13	27	1.87
703074--703129	21	2.6	22	75	13	64	55	7	14	23	1.63
704640--704706	37	1.9	35	88	11	102	29	25	11	32	1.92
705185--705210	13	2.0	13	100	0	52	30	23	15	30	1.95
708214--708287	20	3.7	20	100	0	148	21	14	10	52	1.72
708167--708287	40	2.9	41	87	6	154	25	14	13	46	1.81
708273--708298	13	2.0	13	100	0	52	30	15	15	38	1.88
708419--708464	21	2.2	20	81	11	58	32	19	4	43	1.71
714732--715218	49	10.0	49	80	8	530	31	17	26	24	1.97
714728--715218	92	5.0	101	90	4	703	31	17	26	24	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
717450--717511	19	3.6	19	65	24	55	37	20	14	27	1.92
717453--717524	32	2.2	32	100	0	144	38	22	13	25	1.91
717603--717656	20	2.7	20	97	0	99	37	18	11	33	1.86
718156--718208	22	2.5	22	96	3	99	26	32	0	41	1.56
718246--718284	20	1.9	21	89	5	62	35	17	0	46	1.49
719828--719931	51	2.0	51	96	0	190	47	15	16	21	1.83
720986--721053	20	3.4	20	81	0	73	36	14	5	42	1.70
721958--721998	21	2.0	21	90	4	66	19	12	17	51	1.76
726839--727184	172	2.0	172	97	0	647	31	18	15	34	1.93
729911--729964	20	2.7	20	94	0	90	27	12	12	46	1.79

Tables:   1   2   3   4   5   6