genome.fa.s358.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold358
Parameters: 2 7 7 80 10 50 1000
Length:  583678

Tables:   1   2   3   4   

This is table  3  of  4  ( 442 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
347346--347388	20	2.1	20	86	4	59	9	25	44	20	1.81
347820--347844	13	1.9	13	100	0	50	32	16	16	36	1.90
354020--354045	13	2.0	13	100	0	52	30	15	15	38	1.88
354000--354063	32	2.0	33	90	3	103	28	14	15	42	1.86
354118--354169	20	2.6	20	100	0	104	28	11	13	46	1.78
354449--354478	13	2.2	14	94	5	53	50	13	10	26	1.73
355357--355386	12	2.6	12	94	5	53	60	0	0	40	0.97
356057--356129	24	2.8	26	76	12	78	5	23	0	71	1.07
356149--356219	5	14.8	5	73	22	55	1	16	0	81	0.76
356154--356219	19	3.4	19	85	8	71	1	18	0	80	0.79
356149--356221	27	2.7	27	77	10	78	1	17	0	80	0.78
356174--356246	27	2.7	27	80	8	76	5	16	1	76	1.04
360633--360817	50	3.9	49	79	15	235	42	11	16	29	1.84
360633--360806	90	1.9	90	95	0	312	41	12	16	29	1.85
360633--360806	20	7.7	20	72	22	132	41	12	16	29	1.85
361978--362010	16	2.1	16	94	5	59	45	9	21	24	1.80
362003--362427	28	15.1	28	87	3	559	24	17	28	29	1.97
364696--364720	13	1.9	13	100	0	50	36	8	16	40	1.77
364646--364769	62	2.0	63	85	1	169	29	13	15	41	1.86
366877--367254	79	4.8	78	76	8	307	26	23	16	33	1.95
372210--372384	90	1.9	91	90	1	280	41	12	17	29	1.85
372260--372384	20	5.8	20	70	17	88	40	12	16	29	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
377162--377437	56	4.9	57	79	8	300	47	18	14	19	1.83
377162--377432	111	2.4	110	83	7	314	47	18	14	19	1.83
377751--377802	20	2.7	20	96	3	97	40	13	19	26	1.88
377795--377851	24	2.4	24	96	0	105	35	15	22	26	1.94
380106--380144	14	2.9	14	80	3	53	28	0	2	69	1.02
382390--382436	20	2.4	20	82	3	60	36	19	12	31	1.89
390711--390737	13	2.1	13	100	0	54	29	14	14	40	1.86
390722--390777	19	2.9	19	89	2	85	32	19	14	33	1.92
397055--398117	79	13.4	79	88	1	1549	33	14	24	27	1.95
397253--397310	28	2.0	28	86	6	80	29	20	27	22	1.99
399282--399521	35	6.9	35	96	1	428	20	32	5	41	1.76
399291--399496	21	11.5	20	62	31	94	20	32	5	41	1.76
399528--399555	6	4.7	6	100	0	56	28	0	0	71	0.86
400220--400453	61	3.9	61	80	7	271	27	20	26	25	1.99
400221--400475	122	2.2	118	84	9	324	25	20	27	26	1.99
400514--400659	29	5.2	29	62	15	92	23	19	30	26	1.98
400391--400574	94	2.0	94	92	2	307	24	19	31	24	1.98
400497--400736	55	4.2	55	87	6	345	22	22	27	27	1.99
400497--400736	110	2.1	110	91	6	383	22	22	27	27	1.99
400275--400877	266	2.2	265	86	5	816	25	20	29	25	1.99
400760--400909	62	2.4	61	88	2	228	26	20	28	25	1.99
414302--414860	79	7.1	79	91	1	847	33	13	24	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
416263--416467	35	5.9	35	97	2	394	20	31	5	42	1.75
416476--416504	12	2.3	13	94	5	51	27	0	3	68	1.05
416916--416961	22	2.1	22	92	8	76	80	0	0	19	0.71
416916--416961	17	2.7	18	87	12	62	80	0	0	19	0.71
416920--416952	5	6.8	5	86	6	50	81	0	0	18	0.68
417429--417538	52	2.2	50	83	3	130	33	14	9	42	1.77
418431--418471	20	2.0	20	86	9	57	21	17	9	51	1.74
421938--421970	17	2.0	16	94	5	57	27	24	6	42	1.78
422103--422275	40	4.3	40	82	8	167	23	20	12	43	1.85
422102--422275	80	2.2	80	84	6	219	22	20	12	44	1.85
422209--422295	39	2.2	41	81	4	97	27	29	10	32	1.90
422329--422430	41	2.5	41	88	0	141	26	20	7	45	1.78
422480--422570	41	2.4	36	77	19	103	26	20	13	39	1.89
422493--422705	41	5.2	41	72	8	166	23	23	11	42	1.86
422510--422705	82	2.4	82	80	1	223	22	22	11	43	1.85
422767--422844	41	1.9	40	87	7	113	19	23	15	42	1.89
422939--423160	41	5.5	41	72	12	120	23	21	10	45	1.82
423017--423114	40	2.4	41	84	1	117	22	18	11	47	1.80
423098--423229	40	3.4	40	74	15	132	23	22	10	43	1.84
423540--423750	83	2.6	83	82	3	230	24	24	9	41	1.85
423430--423750	41	7.8	41	77	6	254	24	23	10	41	1.86
423818--423921	40	2.6	40	89	1	145	23	28	6	41	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
423786--423927	41	3.5	40	80	2	149	21	23	10	43	1.84
429832--429872	18	2.4	18	84	8	50	14	9	0	75	1.04
437873--437913	21	2.0	21	85	0	55	2	26	2	68	1.15
438304--438368	34	2.0	32	82	11	78	38	12	1	47	1.50
438961--439013	27	1.9	28	84	3	72	37	0	1	60	1.08
448620--448645	13	2.0	13	100	0	52	38	15	15	30	1.88
450872--450916	21	2.1	21	84	8	56	53	4	20	22	1.63
452720--452758	15	2.6	15	91	0	60	51	15	20	12	1.76
454969--455015	21	2.3	20	82	10	60	31	19	4	44	1.70
457382--457407	13	2.0	13	100	0	52	38	15	15	30	1.88
459477--459515	20	2.0	20	85	10	53	53	0	5	41	1.23
463129--463153	13	1.9	13	100	0	50	32	16	16	36	1.90
463111--463173	33	1.9	33	86	0	90	41	15	11	31	1.83
463504--463552	24	2.0	24	100	0	98	30	16	4	48	1.64
464035--464074	21	1.9	21	85	10	55	40	7	5	47	1.54
464383--464453	30	2.3	30	84	13	92	46	1	14	38	1.53
464396--464464	31	2.2	33	82	10	81	52	2	11	33	1.53
464647--464707	21	2.7	23	85	12	90	39	0	0	60	0.97
464653--464700	21	2.3	21	100	0	96	39	0	0	60	0.97
464695--464739	21	2.1	21	91	0	72	66	0	6	26	1.16
464708--464769	28	2.2	29	88	2	90	72	0	8	19	1.09
466647--466672	13	2.0	13	100	0	52	30	15	15	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
466711--466818	20	5.8	19	71	18	84	27	16	14	40	1.88
466726--466797	33	2.2	33	92	0	117	26	18	16	38	1.91
466748--466778	13	2.4	13	94	0	53	25	16	19	38	1.92
469112--469226	51	2.3	51	86	6	153	30	27	12	29	1.93
469163--469460	79	3.8	78	85	4	395	26	26	15	31	1.95
469396--469514	51	2.3	51	82	0	148	29	28	11	30	1.92
469495--469571	28	2.8	28	87	0	109	23	32	19	24	1.97
469555--469669	51	2.3	50	86	1	167	29	24	12	33	1.91
469523--469859	130	2.6	129	76	7	358	28	25	11	34	1.91
471844--471868	4	6.2	4	100	0	50	24	0	0	76	0.80
479996--480021	13	2.0	13	100	0	52	30	15	15	38	1.88
479976--480040	33	2.0	33	87	6	96	27	13	16	41	1.87
480662--480752	39	2.3	41	79	9	107	34	23	5	37	1.78
482112--482154	20	2.1	20	82	4	50	9	27	44	18	1.80
482585--482622	13	2.9	13	96	0	67	31	15	18	34	1.92
484696--484733	15	2.5	15	91	0	58	13	21	15	50	1.78
488813--488838	13	2.0	13	100	0	52	30	15	15	38	1.88
488793--488857	33	2.0	33	87	6	96	27	13	16	41	1.87
492110--492187	1	78.0	1	71	0	57	85	10	3	0	0.71
492112--492186	8	8.9	8	84	11	87	85	10	4	0	0.73
492112--492186	17	4.4	16	85	9	87	85	10	4	0	0.73
492111--492176	26	2.6	26	83	9	82	86	12	1	0	0.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
492109--492187	35	2.3	35	86	8	108	84	11	3	0	0.74
492112--492176	25	2.6	25	87	7	87	86	12	1	0	0.65
493136--493731	116	5.2	113	82	10	660	26	27	20	25	1.99
493137--493731	55	10.3	56	80	11	645	26	27	20	25	1.99
493830--493935	40	2.6	41	76	7	108	20	26	14	38	1.91
494676--494701	13	2.0	13	100	0	52	30	15	15	38	1.88
494742--494813	20	3.6	19	83	7	81	30	18	9	41	1.82
497100--497219	51	2.4	52	80	8	140	29	26	13	30	1.94
497151--497449	79	3.8	79	85	4	392	27	26	15	31	1.95
497385--497504	51	2.4	51	85	0	177	29	27	13	30	1.94

Tables:   1   2   3   4