genome.fa.s358.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold358
Parameters: 2 7 7 80 10 50 1000
Length:  583678

Tables:   1   2   3   4   

This is table  4  of  4  ( 442 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
497484--497560	28	2.8	28	91	0	118	20	33	20	24	1.97
497544--497661	50	2.3	51	85	4	159	29	27	11	32	1.91
497354--497689	158	2.1	158	81	4	385	27	27	13	31	1.94
497512--497847	129	2.6	128	75	6	352	27	25	12	34	1.92
501411--501486	21	3.7	21	80	3	100	28	17	11	42	1.84
501432--501504	20	3.6	20	81	3	101	31	19	13	35	1.91
501411--501504	41	2.3	41	98	0	179	29	18	12	39	1.88
503957--503995	13	3.0	13	96	0	69	35	15	17	30	1.91
503981--504059	20	3.7	20	75	18	70	45	15	13	25	1.83
510167--510192	13	2.0	13	100	0	52	30	15	15	38	1.88
510231--510306	21	3.7	21	80	3	100	28	17	11	42	1.84
510252--510324	20	3.6	20	81	3	101	31	19	13	35	1.91
510231--510324	41	2.3	41	98	0	179	29	18	12	39	1.88
512771--512835	21	3.6	19	73	26	70	43	15	12	29	1.83
512789--512814	13	2.0	13	100	0	52	38	15	15	30	1.88
512771--512835	34	2.0	33	93	6	114	43	15	12	29	1.83
515035--515084	21	2.3	21	80	10	57	56	4	18	22	1.58
516878--516908	15	2.1	15	93	0	53	48	16	22	12	1.80
518990--519025	13	2.8	13	95	0	63	33	16	16	33	1.92
519129--519174	21	2.2	20	81	11	58	32	19	4	43	1.71
521524--521588	21	3.6	19	73	26	70	44	15	12	27	1.82
521542--521567	13	2.0	13	100	0	52	38	15	15	30	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
521524--521588	34	2.0	33	93	6	114	44	15	12	27	1.82
522661--522873	103	2.0	103	85	6	284	45	12	12	29	1.79
524241--524475	80	3.0	78	80	7	278	35	14	24	25	1.93
524411--524508	51	1.9	50	83	2	124	35	9	24	30	1.87
524517--524583	28	2.4	28	92	0	107	34	20	19	25	1.96
524539--524694	79	2.0	79	83	0	195	33	12	26	27	1.92
524467--524660	107	1.8	108	84	3	266	32	15	25	26	1.95
525670--525724	19	2.8	20	91	2	85	30	16	18	34	1.93
525775--525822	13	4.1	13	72	25	52	33	12	16	37	1.86
528196--528239	23	1.9	23	85	0	61	27	36	20	15	1.93
528259--528577	31	9.7	31	76	13	180	21	31	14	32	1.93
528250--528341	30	3.0	30	83	10	123	21	29	17	31	1.96
528216--528578	61	5.5	64	73	13	288	21	32	14	31	1.93
528340--528458	39	3.2	38	76	12	129	18	35	10	36	1.84
528380--528449	35	2.0	34	86	2	95	18	31	11	38	1.86
528458--528547	30	3.0	29	85	9	135	23	28	16	31	1.96
528217--528661	203	2.2	202	93	1	766	20	33	13	33	1.91
528553--528689	39	3.6	39	75	17	146	18	35	11	34	1.88
528522--528690	74	2.3	72	80	7	218	19	33	12	34	1.89
528217--528764	203	2.7	201	85	5	552	22	32	13	31	1.93
528781--529686	49	18.9	49	80	8	930	25	24	18	31	1.97
529048--529681	43	13.5	43	77	13	480	25	25	18	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
528773--529681	290	3.2	289	90	4	1332	25	24	18	31	1.97
530300--530362	32	2.0	32	93	0	108	33	12	17	36	1.88
530299--530366	19	3.9	19	74	21	76	32	11	17	38	1.86
530406--530430	13	1.9	13	100	0	50	32	16	16	36	1.90
530439--530564	52	2.4	52	90	0	189	35	17	18	28	1.93
534887--534927	18	2.2	19	86	4	57	36	2	31	29	1.71
535599--535624	13	2.0	13	100	0	52	30	15	15	38	1.88
535788--535826	20	2.0	20	94	0	69	46	15	12	25	1.81
538214--538280	25	2.6	27	77	13	68	61	1	0	37	1.05
540993--541032	16	2.5	16	80	15	55	32	0	7	60	1.25
545933--545988	28	2.0	28	93	6	96	12	12	7	67	1.40
546793--546817	13	1.9	13	100	0	50	32	16	16	36	1.90
546826--546950	52	2.4	52	91	0	205	36	17	16	29	1.92
554194--554224	15	2.1	15	93	0	53	48	16	22	12	1.80
556298--556323	13	2.0	13	100	0	52	30	15	15	38	1.88
561180--561298	52	2.3	51	94	1	202	30	17	17	34	1.93
561307--561331	13	1.9	13	100	0	50	36	16	16	32	1.90
561394--561418	13	1.9	13	100	0	50	32	16	16	36	1.90
562177--562370	52	3.7	52	82	6	216	34	16	24	24	1.95
562177--562381	49	3.9	51	82	6	209	34	16	25	24	1.95
562397--562850	30	15.5	30	78	9	384	24	16	29	29	1.97
562381--562850	57	8.0	59	76	10	331	24	17	29	29	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
562381--562637	88	2.9	87	90	4	383	20	17	29	32	1.96
562674--562846	29	5.9	29	81	6	170	25	17	29	27	1.98
564262--564377	1	116.0	1	77	0	88	1	3	8	86	0.76
564262--564377	10	11.5	10	77	14	114	1	3	8	86	0.76
564262--564378	50	2.3	49	85	5	146	1	3	9	85	0.78
564264--564339	39	1.9	39	92	5	127	1	2	9	86	0.71
564264--564377	40	2.8	40	83	11	128	1	3	8	85	0.77
571853--571887	17	2.1	17	100	0	70	40	5	22	31	1.78
574080--574106	10	2.7	10	100	0	54	77	22	0	0	0.76
578241--578359	52	2.3	51	92	1	193	30	16	17	35	1.93
578368--578392	13	1.9	13	100	0	50	36	16	16	32	1.90
578433--578532	33	3.0	33	94	0	164	38	14	12	36	1.83
578455--578512	13	3.9	13	73	26	53	32	15	13	37	1.87
578468--578533	20	3.7	20	73	26	83	34	15	12	37	1.84
581027--581069	20	2.0	22	86	8	63	16	11	25	46	1.80
582595--582736	48	3.1	47	91	7	220	18	24	17	39	1.92

Tables:   1   2   3   4

The End!