genome.fa.s364.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold364
Parameters: 2 7 7 80 10 50 1000
Length:  2089110

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  1  of  10  ( 1160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
768--822	21	2.5	22	83	16	62	32	0	3	63	1.12
1730--1788	16	3.7	16	79	0	64	5	18	35	40	1.73
1732--1798	32	2.1	32	86	5	91	5	17	34	41	1.74
2051--2096	12	3.8	12	80	5	56	47	19	0	32	1.50
2106--2154	14	3.4	14	80	8	55	42	12	0	44	1.41
2169--2358	7	26.7	7	73	12	93	47	14	0	37	1.48
2724--2814	7	12.9	8	73	22	62	41	15	0	42	1.47
2825--3085	7	37.3	7	66	13	58	42	22	1	33	1.65
2656--3205	14	39.4	14	67	17	132	40	22	1	35	1.64
2787--2917	57	2.3	56	89	6	210	40	24	0	34	1.61
2788--2952	21	8.2	20	67	19	71	40	23	1	34	1.65
2903--2966	27	2.4	26	84	10	76	42	21	4	31	1.74
2927--2978	26	2.0	26	85	7	70	42	25	3	28	1.72
2889--2978	33	2.7	33	77	5	101	43	26	3	26	1.70
3559--3599	12	3.5	12	83	6	57	63	0	0	36	0.95
6222--6257	17	2.1	17	94	0	63	13	11	5	69	1.34
6216--6477	88	3.0	88	82	5	307	26	14	5	53	1.63
8783--8837	21	2.5	22	83	16	62	32	0	3	63	1.12
9732--9800	16	4.2	16	77	1	75	5	14	36	43	1.70
9757--9842	32	2.7	30	78	7	73	9	16	26	47	1.76
10096--10141	12	3.8	12	80	5	56	47	19	0	32	1.50
10151--10398	14	18.0	14	68	13	68	44	14	0	39	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10151--10274	28	4.4	28	75	3	79	42	13	1	41	1.54
10214--10403	7	26.7	7	73	14	86	47	13	0	38	1.47
10234--10356	28	4.4	28	72	13	101	47	16	0	34	1.52
10577--10615	21	1.9	20	84	5	51	41	20	0	38	1.53
10598--10680	21	4.1	20	70	23	57	40	22	3	32	1.71
10702--10984	21	13.6	21	69	15	142	38	21	2	36	1.67
10711--11019	14	22.4	14	66	15	119	39	23	2	35	1.67
10769--10858	7	12.7	7	71	14	60	41	18	0	40	1.51
10711--11080	28	13.3	28	68	12	140	39	22	2	35	1.66
10857--11117	7	37.3	7	66	13	58	41	22	1	33	1.65
10819--10949	57	2.3	56	89	6	210	40	24	0	34	1.61
10935--10998	27	2.4	26	84	10	76	42	21	4	31	1.74
10959--11010	26	2.0	26	85	7	70	42	25	3	28	1.72
10921--11010	33	2.7	33	77	5	101	43	26	3	26	1.70
11011--11084	29	2.6	30	76	8	82	39	20	1	39	1.61
11162--11232	28	2.5	29	71	13	76	43	25	1	29	1.63
11162--11237	14	5.4	14	71	13	50	44	25	1	28	1.62
11592--11632	12	3.5	12	83	6	57	63	0	0	36	0.95
15293--15397	44	2.4	44	79	6	113	26	28	21	22	1.99
20001--20028	2	14.0	2	100	0	56	50	0	0	50	1.00
23323--23357	3	11.7	3	100	0	70	31	0	0	68	0.90
23487--23512	7	3.7	7	100	0	52	11	0	0	88	0.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29165--29190	13	2.0	13	100	0	52	38	15	15	30	1.88
29147--29210	32	2.0	33	87	3	94	42	14	14	29	1.84
32691--32721	15	2.1	15	93	0	53	48	16	22	12	1.80
34803--34840	13	2.9	13	96	0	67	34	18	15	31	1.92
34952--34997	21	2.2	20	81	11	58	32	19	4	43	1.71
36452--36495	23	2.0	21	82	8	52	15	9	15	59	1.61
37378--37403	13	2.0	13	100	0	52	38	15	15	30	1.88
39448--39480	15	2.2	15	94	0	57	51	18	9	21	1.73
40593--40619	13	2.1	13	100	0	54	29	14	14	40	1.86
40603--40660	19	3.0	19	79	2	71	37	17	12	32	1.86
46161--46200	19	2.1	19	100	0	80	47	10	22	20	1.79
47635--47678	20	2.1	21	87	4	63	52	0	2	45	1.13
47735--47784	16	2.8	18	80	20	61	34	0	0	66	0.92
50894--50935	15	2.9	14	86	10	57	42	4	2	50	1.36
53715--53758	22	2.0	22	100	0	88	45	22	9	22	1.80
58078--58205	52	2.5	52	93	3	215	31	17	17	33	1.93
58078--58225	52	2.9	50	85	12	185	32	16	18	32	1.93
58214--58238	13	1.9	13	100	0	50	36	16	16	32	1.90
58279--58345	33	2.0	33	88	0	98	40	11	13	34	1.81
58301--58325	13	1.9	13	100	0	50	32	16	16	36	1.90
59162--59483	55	5.8	55	72	13	248	35	15	24	24	1.94
59089--59483	171	2.3	171	94	1	691	36	14	24	24	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
59398--60139	49	15.7	47	80	11	776	32	18	24	24	1.97
59397--60139	92	7.9	92	87	7	1053	32	18	24	24	1.97
59331--60139	291	2.8	290	94	3	1385	32	17	24	24	1.97
59397--60139	184	3.9	184	90	5	1198	32	18	24	24	1.97
60144--60236	33	2.8	33	93	6	163	15	19	36	29	1.92
60238--60431	34	5.5	35	84	12	247	36	11	34	18	1.87
60241--60431	71	2.7	71	91	3	298	35	11	34	18	1.87
60440--60749	33	9.0	33	78	11	329	33	12	33	20	1.90
60354--60523	87	1.9	88	93	1	297	33	14	32	19	1.91
60440--60749	70	4.5	66	82	10	347	33	12	33	20	1.90
62088--62142	14	3.5	15	85	11	67	0	0	12	87	0.55
62090--62144	11	4.9	11	85	12	76	0	0	14	85	0.60
62089--62147	23	2.6	22	87	10	84	0	0	13	86	0.57
62088--62160	34	2.1	34	85	5	94	2	4	10	82	0.91
68558--68685	52	2.5	52	94	3	224	30	17	17	33	1.94
68694--68718	13	1.9	13	100	0	50	36	16	16	32	1.90
68759--68825	33	2.0	33	88	0	98	40	11	13	34	1.81
68781--68805	13	1.9	13	100	0	50	32	16	16	36	1.90
77056--77182	60	2.1	61	88	5	188	36	16	16	30	1.91
82110--82217	16	6.8	16	91	3	155	57	1	0	40	1.09
82120--82188	10	7.0	10	69	21	56	59	0	0	40	0.97
82110--82217	49	2.3	47	90	3	162	57	1	0	40	1.09
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
82110--82233	16	7.8	16	88	4	144	58	2	0	38	1.11
82175--82235	15	3.9	15	89	4	68	60	4	0	34	1.18
83391--83426	6	6.0	6	100	0	72	16	33	16	33	1.92
85076--85123	15	3.5	13	76	18	53	56	0	4	39	1.19
85076--85129	13	4.0	14	81	13	69	55	0	3	40	1.17
85082--85144	16	4.3	14	78	13	65	53	1	3	41	1.26
85211--85248	19	2.0	19	89	0	58	42	15	2	39	1.61
89183--89222	5	8.0	5	97	0	62	20	5	20	55	1.62
90293--90336	23	1.9	23	85	0	61	31	4	2	61	1.28
91405--91443	16	2.5	16	87	4	62	30	0	0	69	0.89
91383--91491	43	2.4	45	81	15	120	34	0	3	61	1.14
98907--98956	20	2.5	20	80	9	57	36	0	0	64	0.94
99415--99473	29	2.1	28	83	3	73	47	3	1	47	1.29
100427--100498	6	11.0	6	76	17	56	36	0	0	63	0.94
100431--100494	21	3.0	22	82	8	80	37	0	0	62	0.95
100443--100487	15	3.1	14	81	9	54	40	0	0	60	0.97
100425--100488	15	4.6	14	79	13	53	37	0	0	62	0.95
100430--100498	27	2.6	24	79	18	75	36	0	0	63	0.94
102723--102751	2	14.5	2	100	0	58	51	0	0	48	1.00
107153--107179	2	13.5	2	100	0	54	0	48	0	51	1.00
107693--107822	65	2.0	65	100	0	260	20	16	27	35	1.94
110248--110278	2	15.0	2	93	6	53	48	3	0	48	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112223--112252	4	7.5	4	92	0	51	0	26	43	30	1.55
112603--112636	3	11.0	3	93	6	59	32	0	2	64	1.08
113132--113164	3	10.7	3	93	6	57	66	0	0	33	0.92
113439--113487	21	2.3	21	86	6	64	36	0	0	63	0.95
113614--113652	18	2.2	18	86	9	53	56	5	0	38	1.22
114272--114425	48	3.2	46	77	9	148	58	12	8	20	1.60
115004--115045	19	2.2	20	86	4	59	33	0	0	66	0.92
115037--115081	22	2.0	24	86	8	67	31	0	8	60	1.28
115298--115324	8	3.4	8	100	0	54	22	0	0	77	0.76
115372--115423	26	2.0	26	85	7	70	44	0	7	48	1.31

Tables:   1   2   3   4   5   6   7   8   9   10