Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold364
Parameters: 2 7 7 80 10 50 1000
Length:  2089110

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  10  of  10  ( 1160 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1942579--1942669
7
12.9
7
72
16
64
43
2
2
51
1.26
1942530--1942669
65
2.2
65
88
0
199
41
5
2
50
1.38
1949142--1949217
21
3.7
21
75
8
66
47
0
0
52
1.00
1951682--1951727
24
2.0
24
91
4
76
50
0
4
45
1.21
1951699--1951779
28
2.8
28
85
7
101
58
1
3
37
1.24
1955569--1955632
24
2.9
22
78
17
69
48
0
0
51
1.00
1955613--1955639
13
2.1
13
100
0
54
37
0
0
62
0.95
1959741--1959785
18
2.5
18
92
0
72
13
33
11
42
1.79
1960087--1960138
22
2.4
20
81
15
59
40
1
0
57
1.10
1960099--1960161
22
2.7
23
80
7
74
42
1
0
55
1.09
1968848--1968894
17
2.8
16
81
9
58
27
2
0
70
0.99
1969069--1969117
25
2.0
24
84
11
64
42
2
2
53
1.24
1969330--1969367
19
2.0
19
100
0
76
26
15
5
52
1.64
1969330--1969376
19
2.5
19
92
0
67
27
12
4
55
1.56
1970232--1970277
20
2.2
21
77
14
51
67
0
0
32
0.91
1977311--1977453
19
7.4
20
67
26
69
59
0
0
39
1.03
1977325--1977452
15
8.5
15
69
16
77
59
0
0
39
1.03
1977312--1977434
33
3.9
32
69
18
96
58
0
0
40
1.04
1977341--1977386
24
1.9
24
86
8
67
54
0
0
45
0.99
1977333--1977410
20
3.8
20
76
20
79
57
0
0
42
0.98
1977325--1977413
42
2.1
42
85
8
119
58
0
0
41
0.98
1982426--1982452
4
6.8
4
100
0
54
74
0
0
25
0.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1984414--1984458
23
2.0
21
87
8
63
57
0
0
42
0.98
1984433--1984490
30
1.9
31
85
3
82
56
1
0
41
1.09
1991176--1991206
2
15.5
2
93
0
53
54
0
0
45
0.99
1994836--1994913
2
39.0
2
81
0
84
41
2
6
50
1.42
1994836--1994913
20
3.9
20
81
6
95
41
2
6
50
1.42
1996326--1996355
3
10.0
3
100
0
60
33
0
0
66
0.92
2001617--2001658
21
2.1
20
82
8
50
59
11
2
26
1.45
2003451--2003491
2
21.0
2
95
5
75
48
0
0
51
1.00
2004971--2005003
15
2.1
16
88
5
50
54
0
3
42
1.15
2005026--2005082
20
2.9
19
80
10
71
42
0
0
57
0.98
2005421--2005457
16
2.3
17
81
13
51
32
0
0
67
0.91
2005402--2005498
20
4.8
21
75
18
71
30
0
2
67
1.03
2005434--2005502
11
6.5
11
79
15
65
24
0
2
72
0.98
2005439--2005508
23
3.0
22
81
8
86
24
1
2
71
1.08
2006739--2006783
16
2.8
16
86
6
56
60
0
0
40
0.97
2007481--2007534
17
3.2
18
77
12
62
62
0
0
37
0.95
2007477--2007573
28
3.5
27
76
5
79
61
0
1
37
1.03
2007523--2007567
21
2.1
22
87
4
65
66
0
2
31
1.04
2007866--2007918
24
2.2
24
90
6
81
45
0
0
54
0.99
2007873--2007929
24
2.3
24
85
8
71
40
3
0
56
1.17
2010520--2010578
21
2.8
21
76
16
59
38
1
0
59
1.08
2012829--2012866
18
2.1
19
85
9
53
23
5
0
71
1.07
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2013163--2013191
2
14.5
2
100
0
58
48
0
0
51
1.00
2014644--2014675
16
2.0
16
93
0
55
71
0
28
0
0.86
2019915--2019960
16
2.8
16
83
9
58
54
0
2
43
1.12
2022548--2022683
69
2.0
69
97
0
254
19
12
22
46
1.83
2024488--2024550
25
2.4
25
73
19
58
52
1
1
44
1.20
2030220--2030263
2
22.0
2
85
0
61
47
0
0
52
1.00
2041846--2041893
20
2.4
20
86
6
62
47
0
0
52
1.00
2041848--2041886
17
2.2
17
90
9
60
46
0
0
53
1.00
2041902--2041934
16
2.1
16
88
11
50
60
9
0
30
1.27
2042050--2042086
3
12.3
3
100
0
74
32
0
0
67
0.91
2042358--2042396
20
1.9
21
89
5
62
48
0
0
51
1.00
2046844--2047063
34
6.5
34
91
0
334
27
9
25
38
1.86
2047369--2047431
19
3.3
19
90
0
90
28
17
19
34
1.94
2051497--2051748
34
7.5
34
90
2
357
26
8
25
39
1.84
2052464--2052507
14
3.1
14
87
12
63
40
0
0
59
0.98
2052466--2052514
14
3.4
14
85
2
62
36
0
0
63
0.95
2052463--2052543
30
2.7
30
81
5
94
38
0
0
61
0.96
2055606--2055658
23
2.2
24
83
3
72
50
0
0
49
1.00
2064347--2064376
2
15.0
2
92
0
51
46
0
3
50
1.18
2064546--2064572
4
6.8
4
100
0
54
74
0
0
25
0.83
2064862--2064891
6
5.0
6
100
0
60
83
0
0
16
0.65
2066921--2066948
2
14.0
2
100
0
56
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2066972--2067022
26
1.9
26
84
4
66
35
0
11
52
1.38
2067659--2067684
3
8.7
3
100
0
52
69
0
0
30
0.89
2070560--2070584
13
1.9
13
100
0
50
92
0
8
0
0.40
2076776--2076805
3
10.0
3
100
0
60
33
0
0
66
0.92
2077463--2077515
23
2.3
24
87
6
74
39
0
0
60
0.97
2079736--2079773
20
1.9
20
84
10
51
34
0
0
65
0.93
2082981--2083034
27
2.0
27
89
7
83
42
0
0
57
0.98
2083842--2083904
32
2.0
32
87
6
92
38
0
0
61
0.96
2086065--2086168
21
5.3
18
73
19
68
58
0
0
40
1.04
2086084--2086135
16
3.1
16
78
10
59
61
0
0
38
0.96
2086065--2086133
18
3.4
20
77
20
72
59
0
0
40
0.97
2086067--2086157
22
4.5
20
75
17
73
59
1
0
39
1.05
2087689--2087718
2
15.0
2
100
0
60
50
0
50
0
1.00
2087843--2087869
3
9.0
3
100
0
54
0
33
0
66
0.92

Tables:   1   2   3   4   5   6   7   8   9   10

The End!