genome.fa.s364.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold364
Parameters: 2 7 7 80 10 50 1000
Length:  2089110

Tables:   1   2   3   4   5   6   7   8   9   10   

This is table  2  of  10  ( 1160 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
115388--115439	26	2.0	27	85	11	72	50	0	5	44	1.26
117360--117425	6	11.0	6	98	0	87	16	40	16	25	1.89
122414--122453	7	5.7	7	96	0	71	30	30	15	25	1.95
125396--125429	2	17.0	2	100	0	68	50	0	0	50	1.00
125784--125823	17	2.3	17	86	4	53	77	2	2	17	0.99
129565--129596	2	17.0	2	87	12	50	50	0	0	50	1.00
130193--130224	2	16.5	2	93	6	57	53	0	0	46	1.00
130909--130942	14	2.5	14	90	4	52	41	0	0	58	0.98
130888--130962	29	2.5	29	81	12	89	42	0	2	54	1.14
131645--132063	86	5.0	86	70	16	374	31	15	25	26	1.96
131667--132160	247	2.0	247	99	0	970	33	14	23	28	1.94
133053--133081	8	3.6	8	100	0	58	10	24	41	24	1.86
133097--133131	18	1.9	18	94	0	61	31	0	0	68	0.90
133100--133146	21	2.4	21	80	19	57	31	0	0	68	0.90
133791--133854	20	3.0	22	86	6	87	62	0	0	37	0.95
140003--140058	22	2.7	21	81	8	69	44	12	10	32	1.77
140171--140217	21	2.1	23	88	7	71	42	12	14	29	1.83
144436--144481	15	3.1	15	90	0	74	28	15	13	43	1.83
146036--146074	2	19.5	2	100	0	78	48	0	0	51	1.00
146832--146862	3	10.3	3	100	0	62	32	0	0	67	0.91
146861--146888	3	9.3	3	100	0	56	35	0	32	32	1.58
147746--147770	2	12.5	2	100	0	50	52	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
147771--147807	5	7.8	5	90	3	51	43	2	32	21	1.67
149091--149139	17	2.8	18	82	14	59	53	0	0	46	1.00
149068--149122	28	2.0	29	89	7	87	56	0	0	43	0.99
149159--149271	36	3.3	36	75	20	127	54	0	0	45	0.99
149224--149276	16	3.3	16	74	15	56	56	0	0	43	0.99
149164--149287	29	3.9	31	77	13	103	56	0	0	43	0.99
149263--149296	18	1.9	17	88	5	50	58	0	0	41	0.98
149645--149676	2	16.0	2	100	0	64	50	0	0	50	1.00
152848--152929	30	2.9	30	80	10	84	37	0	0	62	0.96
152851--152954	35	2.9	34	80	9	111	41	0	0	58	0.98
152905--152945	16	2.6	16	100	0	82	43	0	0	56	0.99
152900--152954	16	2.8	20	74	25	64	43	0	0	56	0.99
152857--152955	21	5.1	20	70	20	68	41	0	0	58	0.98
154728--154762	2	18.0	2	88	5	54	48	0	2	48	1.16
156668--156696	9	3.2	9	100	0	58	27	10	0	62	1.28
159181--159223	16	2.6	17	82	10	54	53	0	2	44	1.13
159740--159776	10	3.6	10	85	7	56	0	13	0	86	0.57
159740--159776	15	2.5	15	90	0	65	0	13	0	86	0.57
159912--159951	8	4.6	9	82	17	57	32	0	0	67	0.91
160257--160728	153	3.0	155	94	2	822	33	17	1	47	1.59
160425--160457	16	1.9	18	88	11	52	72	12	0	15	1.12
160631--160663	16	2.1	16	88	11	50	3	21	0	75	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
160622--160675	21	2.8	19	76	13	56	3	18	0	77	0.91
160627--160683	22	2.5	23	77	8	64	3	21	0	75	0.95
160696--160737	10	4.4	10	79	11	52	54	4	2	38	1.34
160697--160731	18	1.9	18	100	0	70	51	5	2	40	1.40
161123--161164	20	2.0	22	90	9	70	66	0	2	30	1.04
161124--161171	17	2.6	17	77	22	53	68	0	2	29	1.01
161297--161371	37	2.0	36	82	10	89	65	1	1	32	1.09
161313--161404	33	2.6	34	83	11	96	65	1	0	33	1.00
161423--161468	20	2.3	20	92	0	74	0	19	0	80	0.71
163658--163690	2	17.0	2	93	6	59	51	0	0	48	1.00
164109--164152	6	7.3	6	89	0	52	52	2	34	11	1.50
164115--164152	12	3.2	12	92	0	58	55	2	34	7	1.43
164841--164888	2	24.0	2	100	0	96	50	0	50	0	1.00
165621--165645	4	6.2	4	100	0	50	72	0	0	28	0.86
169876--169916	2	20.5	2	94	0	73	48	0	2	48	1.14
172114--172158	2	23.0	2	95	4	83	48	0	0	51	1.00
173292--173332	2	20.5	2	100	0	82	51	0	48	0	1.00
179313--179348	12	3.0	12	91	0	54	41	0	8	50	1.33
179449--179514	3	22.0	3	96	0	123	33	1	0	65	1.02
179899--179937	2	19.5	2	100	0	78	48	0	0	51	1.00
180079--180109	2	15.5	2	100	0	62	51	0	0	48	1.00
180744--180773	2	15.0	2	100	0	60	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
197565--197593	3	9.7	3	100	0	58	68	0	0	31	0.89
201175--201340	82	2.0	82	94	0	287	25	17	9	47	1.77
204777--204808	16	2.0	16	93	0	55	15	0	34	50	1.45
205178--205210	2	16.5	2	93	0	57	51	0	0	48	1.00
213971--214009	13	2.9	14	84	3	53	43	0	0	56	0.99
218479--218636	74	2.1	74	96	0	289	27	10	19	43	1.83
218750--218786	2	18.5	2	100	0	74	48	0	51	0	1.00
219537--219564	2	14.0	2	100	0	56	50	0	50	0	1.00
220007--220037	2	15.5	2	100	0	62	48	0	0	51	1.00
228899--228939	19	2.2	19	90	0	64	17	24	12	46	1.82
231298--231410	30	3.6	30	69	22	79	44	0	0	54	1.06
231366--231417	5	10.2	5	76	12	52	36	0	0	63	0.95
231304--231417	31	3.6	31	73	16	99	43	0	0	55	1.05
232123--232163	20	2.0	20	85	9	55	46	4	0	48	1.23
232222--232266	17	2.6	17	82	6	56	68	0	0	31	0.89
232223--232267	24	2.0	22	82	8	54	68	0	0	31	0.89
233352--233972	100	6.2	100	90	1	922	40	6	8	44	1.61
233352--234190	201	4.3	200	86	6	1111	40	6	7	44	1.61
233557--233586	15	2.0	15	100	0	60	40	0	13	46	1.43
233577--233946	36	10.9	35	62	16	118	39	8	8	44	1.64
233657--233686	15	2.0	15	93	0	51	43	0	10	46	1.37
233346--234190	301	2.9	285	85	6	1158	40	6	8	44	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
233757--233786	15	2.0	15	100	0	60	40	0	13	46	1.43
233954--234029	36	2.1	36	85	0	98	36	6	7	48	1.58
233873--234057	85	2.2	85	93	0	307	38	7	8	45	1.62
234043--234072	15	2.0	15	93	0	51	43	0	10	46	1.37
233958--234190	100	2.3	100	89	0	358	39	6	7	45	1.58
234058--234140	36	2.3	36	78	0	103	40	6	6	46	1.53
234143--234172	15	2.0	15	93	0	51	50	0	3	46	1.18
236087--236145	29	2.1	28	81	9	66	45	8	0	45	1.33
236409--236462	23	2.2	25	83	9	67	46	1	0	51	1.11
236401--236463	27	2.3	26	78	10	65	49	1	0	49	1.10
236654--236705	22	2.4	21	78	15	61	63	0	0	36	0.95
236634--236699	24	2.9	23	76	13	64	56	1	0	42	1.08
236894--236935	16	2.6	16	85	11	59	59	0	0	40	0.97
236894--236937	15	2.8	15	89	6	61	59	0	0	40	0.98
236984--237015	13	2.3	15	89	10	50	50	0	0	50	1.00
244917--244945	15	1.9	15	100	0	58	34	17	6	41	1.76
248090--248130	2	20.5	2	84	0	55	46	2	4	46	1.37
248267--248299	2	16.5	2	100	0	66	48	0	0	51	1.00
250252--250285	1	34.0	1	87	0	50	0	5	0	94	0.32
254041--254091	14	3.6	14	77	15	59	52	3	0	43	1.19
254380--254423	17	2.6	16	79	10	52	38	0	2	59	1.10
254380--254423	20	2.3	20	81	11	58	38	0	2	59	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
254610--254653	13	3.3	13	78	15	54	54	0	0	45	0.99
254921--254983	29	2.2	28	83	8	83	42	0	6	50	1.27
257823--257851	6	5.0	6	91	8	51	34	13	0	51	1.42
267383--267419	2	18.5	2	100	0	74	48	0	0	51	1.00
269531--269578	20	2.3	21	85	3	62	56	0	0	43	0.99
280237--280297	26	2.2	28	86	11	83	54	0	0	45	1.00
282883--282954	27	2.7	28	87	6	96	48	16	5	29	1.69
285697--285721	13	1.9	13	100	0	50	32	16	16	36	1.90
288557--288652	27	3.7	27	76	4	90	43	21	12	21	1.86
289174--289249	37	2.1	37	92	5	127	40	18	13	27	1.88

Tables:   1   2   3   4   5   6   7   8   9   10