genome.fa.s374.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold374
Parameters: 2 7 7 80 10 50 1000
Length:  461091

Tables:   1   2   3   4   

This is table  3  of  4  ( 397 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
309226--309274	23	2.1	23	85	14	66	53	2	0	44	1.12
309424--309463	20	1.9	22	85	10	57	65	10	7	17	1.46
309701--309739	16	2.5	15	84	12	51	74	0	0	25	0.82
313760--313792	3	11.0	3	93	0	57	30	36	0	33	1.58
314089--314136	14	3.4	14	82	8	53	43	0	0	56	0.99
314096--314137	15	3.0	14	83	10	50	47	0	0	52	1.00
314111--314156	22	2.1	22	84	8	58	39	2	0	58	1.10
314123--314173	23	2.4	21	75	15	50	41	1	0	56	1.10
314428--314462	18	2.0	17	88	5	52	62	0	0	37	0.95
314460--314521	32	1.9	34	87	9	94	45	0	0	54	0.99
315258--315303	22	2.0	23	84	12	60	65	2	2	30	1.16
316541--316622	44	2.0	40	81	11	94	48	1	0	50	1.08
317560--317619	20	2.7	22	75	14	61	48	0	0	51	1.00
317669--317712	23	1.9	23	85	0	61	56	0	0	43	0.99
317689--317722	14	2.4	14	90	0	50	50	0	0	50	1.00
317678--317771	28	3.2	27	73	11	71	46	1	1	51	1.15
319815--319857	16	2.5	16	81	11	50	58	0	0	41	0.98
319837--319916	26	2.9	27	73	21	76	61	0	0	38	0.96
319836--319916	24	3.0	26	71	14	67	61	0	0	38	0.96
319848--319939	30	3.3	29	75	18	88	61	0	0	38	0.96
319910--319952	16	2.6	17	92	3	70	65	0	0	34	0.93
320505--320548	15	2.9	15	79	0	52	40	0	2	56	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
322745--322771	2	13.5	2	100	0	54	48	0	0	51	1.00
323707--323819	8	13.2	8	69	22	52	56	0	0	42	1.05
323707--323811	32	3.6	27	74	20	88	56	0	0	43	0.99
323702--323793	32	2.7	33	85	8	123	55	0	0	44	0.99
323702--323784	33	2.5	32	90	3	121	55	0	0	44	0.99
323701--323781	18	4.7	19	71	22	63	56	0	0	43	0.99
323703--323812	33	3.5	33	72	20	110	56	0	0	43	0.99
324195--324226	3	10.7	3	100	0	64	31	0	0	68	0.90
324423--324475	20	2.7	20	78	18	58	52	0	0	47	1.00
324437--324493	29	2.0	29	86	10	82	56	0	0	43	0.99
324430--324526	47	2.1	47	83	11	119	53	1	0	45	1.07
324754--324800	24	2.0	24	83	8	60	40	2	2	55	1.24
326228--326271	11	4.1	11	83	13	56	29	0	2	68	1.02
326236--326271	16	2.2	17	85	14	58	30	0	0	69	0.89
326228--326272	5	8.2	6	79	16	53	28	0	2	68	1.01
327232--327305	25	2.9	24	80	8	67	59	0	0	40	0.97
328348--328415	11	6.2	12	73	22	60	58	0	0	41	0.98
328348--328415	33	2.1	33	83	5	84	58	0	0	41	0.98
328349--328409	21	2.9	21	81	13	72	60	0	0	39	0.97
330030--330073	16	2.7	16	80	16	54	40	0	0	59	0.98
330440--330502	26	2.7	22	77	17	74	46	7	0	46	1.32
330822--330881	19	3.0	20	73	11	52	55	1	1	41	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
331899--332450	179	3.0	180	86	7	697	34	7	11	45	1.69
335477--335537	2	30.5	2	96	0	86	49	6	0	44	1.28
336016--336084	25	2.6	27	86	4	88	50	0	0	49	1.00
336016--336086	13	5.5	13	71	18	58	50	0	0	49	1.00
336053--336139	21	3.8	21	67	24	59	49	1	0	49	1.08
337332--337376	18	2.5	18	85	10	65	60	0	0	40	0.97
337332--337374	17	2.4	18	88	7	61	60	0	0	39	0.97
337590--337635	2	23.0	2	86	8	67	45	2	2	50	1.26
338594--338644	24	2.1	26	82	10	63	64	1	9	23	1.34
339606--339635	16	1.9	16	93	6	53	43	0	0	56	0.99
339621--340062	217	2.0	220	87	3	640	49	6	8	35	1.58
344172--344197	12	2.2	12	100	0	52	65	0	0	34	0.93
344343--344394	27	2.1	26	82	13	65	48	0	0	51	1.00
345080--345135	22	2.5	24	80	11	73	46	0	0	53	1.00
346603--346646	17	2.9	15	81	15	54	43	0	0	56	0.99
346581--346641	17	3.5	17	75	24	65	40	1	1	55	1.19
348158--348186	15	2.0	15	93	6	51	75	0	0	24	0.80
348620--348649	15	2.0	15	93	0	51	50	0	0	50	1.00
349230--349280	19	2.8	18	80	13	52	60	1	0	37	1.08
349992--350030	20	1.9	21	89	5	62	35	2	0	61	1.10
350188--350212	2	12.5	2	100	0	50	52	0	0	48	1.00
350522--350585	18	3.5	18	71	10	58	59	0	1	39	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
350563--350611	13	3.7	14	68	15	50	55	0	0	44	0.99
350514--350599	41	2.2	38	82	13	97	53	0	1	45	1.07
350742--350810	22	3.0	23	76	19	74	47	0	0	52	1.00
351219--351260	20	2.1	20	91	8	68	57	0	0	42	0.99
352473--352527	22	2.5	22	80	11	67	36	9	5	49	1.58
354165--354198	15	2.3	15	100	0	68	17	0	0	82	0.67
354380--354430	17	2.9	17	82	2	66	39	3	1	54	1.30
355579--355625	20	2.3	20	82	10	51	76	0	2	21	0.89
356016--356050	17	2.1	17	89	10	54	74	0	0	25	0.82
362780--362834	24	2.3	24	87	6	76	41	0	0	58	0.98
362861--362895	18	2.0	18	94	5	63	40	0	0	60	0.97
362914--362953	16	2.5	17	80	12	57	57	0	0	42	0.98
362921--362955	15	2.4	14	90	4	52	60	0	0	40	0.97
362994--363046	6	8.5	6	83	8	61	35	0	0	64	0.94
362994--363046	13	4.2	12	80	7	61	35	0	0	64	0.94
362994--363046	19	2.8	19	88	2	81	35	0	0	64	0.94
363902--363948	3	15.7	3	100	0	94	31	0	0	68	0.90
365947--366145	99	2.0	99	96	1	364	32	12	20	35	1.89
372817--372862	23	2.0	24	82	4	58	34	0	2	63	1.07
372812--372868	21	2.6	22	73	18	57	38	0	1	59	1.08
375141--375175	3	11.7	3	100	0	70	34	0	0	65	0.93
387962--388002	20	2.0	20	90	9	64	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
388047--388117	32	2.3	31	79	11	83	49	2	0	47	1.16
388696--388727	16	2.1	15	94	5	55	78	0	0	21	0.76
389100--389138	14	2.7	15	88	7	55	61	2	0	35	1.10
389168--389221	17	3.4	17	72	27	55	59	1	0	38	1.08
391973--392015	23	1.9	22	90	4	68	27	18	9	44	1.80
392332--392373	19	2.2	20	87	12	61	47	0	0	52	1.00
392694--392762	12	5.1	13	73	13	50	28	0	4	66	1.10
395016--395048	16	2.2	15	89	10	50	12	21	18	48	1.80
395422--395498	34	2.1	36	81	9	86	57	0	0	42	0.99
395445--395496	12	4.4	12	78	11	54	61	0	0	38	0.96
395510--395588	29	2.9	29	82	14	80	53	8	0	37	1.32
395518--395567	6	8.3	6	82	10	50	54	6	0	40	1.25
395546--395596	25	2.0	25	92	0	84	60	7	0	31	1.25
402614--402646	3	11.3	3	93	6	59	30	0	0	69	0.88
402729--402768	19	2.1	19	90	0	62	52	0	2	45	1.14
402757--402802	25	2.0	24	83	12	60	65	2	0	32	1.05
402766--402807	16	2.6	16	75	14	50	61	2	0	35	1.09
402764--402802	8	4.8	8	84	6	51	64	2	0	33	1.08
404124--404153	16	1.9	15	93	6	51	73	3	23	0	0.98
407465--407506	21	2.0	21	90	9	68	40	0	0	59	0.97
407490--407533	20	2.2	20	84	8	54	56	0	0	43	0.99
407484--407531	16	2.9	17	78	6	53	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
407928--407978	25	2.0	27	84	7	70	35	0	3	60	1.15
408493--408544	27	1.9	27	84	7	70	63	0	1	34	1.06
408506--408556	11	4.6	11	85	7	68	60	0	1	37	1.08
408490--408553	5	12.2	5	77	9	65	62	0	1	35	1.05
409833--409873	21	1.9	22	95	5	75	46	4	21	26	1.72
413389--413416	2	14.0	2	100	0	56	50	0	0	50	1.00
422320--422347	6	4.7	6	100	0	56	17	14	14	53	1.73
422837--422899	17	3.6	18	79	10	60	46	1	1	50	1.20
422948--422988	21	2.0	21	85	4	57	48	0	12	39	1.41
423167--423211	21	2.1	22	87	4	65	46	0	0	53	1.00

Tables:   1   2   3   4