Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold374
Parameters: 2 7 7 80 10 50 1000
Length:  461091

Tables:   1   2   3   4   

This is table  4  of  4  ( 397 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
424391--424446
7
8.3
7
82
7
71
26
1
3
67
1.16
424391--424446
13
4.1
14
79
9
71
26
1
3
67
1.16
424394--424446
20
2.7
20
84
0
70
24
1
3
69
1.15
429210--429262
25
2.0
26
85
7
72
56
0
0
43
0.99
429183--429270
32
2.8
31
77
15
83
53
1
2
43
1.20
433865--433932
24
2.7
25
82
11
68
60
4
1
33
1.26
434067--434102
3
12.0
3
100
0
72
66
0
0
33
0.92
434868--434932
28
2.2
31
78
13
75
44
0
1
53
1.09
434950--434997
24
2.0
25
87
4
71
39
2
0
58
1.10
435233--435257
13
1.9
13
100
0
50
28
16
0
56
1.41
435698--435749
9
6.0
9
74
17
56
42
0
0
57
0.98
435705--435760
17
3.3
17
72
5
51
39
0
0
60
0.97
435770--435807
18
2.2
17
86
9
51
65
0
0
34
0.93
436161--436207
5
9.0
5
78
17
51
55
2
0
42
1.12
436242--436298
27
2.2
26
84
6
71
38
0
0
61
0.96
436258--436312
25
2.2
26
83
9
69
38
0
0
61
0.96
436258--436308
27
1.9
26
84
11
68
39
0
0
60
0.97
436533--436566
17
2.0
17
88
0
50
47
2
5
44
1.42
436890--436922
16
2.1
16
88
11
50
60
0
0
39
0.97
439428--439463
18
2.0
18
100
0
72
27
22
22
27
1.99
440740--440802
18
3.3
18
68
12
54
46
9
34
9
1.69
440734--440811
39
2.0
39
94
0
138
42
11
34
11
1.77
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
441265--441322
29
2.0
29
86
10
82
55
0
0
44
0.99
441315--441349
18
2.0
17
88
5
52
62
2
0
34
1.10
441688--441713
3
8.7
3
100
0
52
34
0
0
65
0.93
441932--441963
15
2.1
16
94
5
57
3
12
0
84
0.74
444437--444507
20
3.5
20
76
0
79
35
11
12
40
1.79
444437--444514
40
2.0
39
89
2
120
34
11
12
41
1.80
456363--457055
28
24.7
28
71
16
143
20
18
31
29
1.96
456544--457248
27
25.5
27
71
17
252
20
17
32
29
1.96
456659--456726
26
2.7
26
82
11
70
22
13
36
27
1.91
456371--457250
84
10.5
81
71
19
411
20
17
32
29
1.96
456377--457108
113
6.6
111
73
16
417
20
17
32
29
1.96
456345--457249
56
16.1
56
72
17
341
20
18
32
29
1.96
456820--457108
58
5.2
53
78
13
191
21
15
32
29
1.95
458448--458508
8
7.5
8
80
9
52
1
8
8
81
0.92
458445--458504
19
3.2
18
77
13
50
1
8
8
81
0.93

Tables:   1   2   3   4

The End!