genome.fa.s393.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold393
Parameters: 2 7 7 80 10 50 1000
Length:  702984

Tables:   1   2   3   4   5   6   

This is table  3  of  6  ( 633 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
275367--275485	51	2.3	51	85	4	159	42	9	15	32	1.79
276207--276617	52	7.9	52	77	3	281	36	15	23	24	1.93
276228--276617	104	3.8	104	77	3	358	36	15	23	24	1.94
276227--276595	155	2.4	156	74	8	340	36	15	23	25	1.93
276685--276898	32	6.7	31	76	5	149	23	17	27	31	1.97
276727--276898	64	2.7	64	78	5	168	22	18	28	31	1.97
276869--277100	32	7.2	32	76	5	137	32	16	22	28	1.96
276748--276930	96	1.9	96	81	6	219	22	19	26	31	1.98
276869--277011	33	4.4	32	78	6	117	34	16	18	29	1.94
277061--277540	33	15.2	32	72	11	255	36	10	28	24	1.88
277093--277605	33	16.2	33	70	14	232	38	9	27	24	1.86
277095--277371	124	2.2	126	80	7	314	34	9	30	25	1.88
277411--277471	28	2.2	28	87	0	86	42	11	24	21	1.86
277344--277605	65	4.1	61	79	11	192	41	9	25	22	1.85
277487--277610	65	1.9	65	91	0	203	46	6	22	24	1.75
277502--277632	37	3.8	36	68	15	107	46	9	22	22	1.79
277604--277716	30	3.7	30	79	8	122	38	15	23	23	1.92
278838--278979	45	3.0	48	84	8	184	21	17	21	38	1.93
295151--295195	23	1.9	23	86	4	63	53	0	4	42	1.21
295400--295428	2	14.5	2	100	0	58	51	0	0	48	1.00
295856--295891	18	2.1	18	89	5	56	66	0	2	30	1.06
295847--295892	14	2.9	16	81	15	60	60	0	4	34	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
296523--296580	23	2.5	24	71	18	59	53	0	0	46	1.00
302418--302447	14	2.1	14	93	0	51	30	0	3	66	1.07
302423--302460	17	2.3	17	86	4	51	26	2	0	71	1.00
302495--302572	3	26.7	3	79	14	65	39	0	1	58	1.06
302488--302568	21	3.8	21	74	12	76	39	0	1	59	1.05
302968--303011	18	2.4	19	81	7	56	38	2	2	56	1.24
303804--303914	9	12.3	9	70	23	65	36	0	0	63	0.94
303809--303878	27	2.5	28	88	6	97	41	0	0	58	0.98
303796--303914	18	6.6	18	68	21	79	36	0	0	63	1.01
303838--303915	35	2.2	35	86	4	104	34	0	0	65	0.93
303841--303922	19	4.6	19	74	17	68	35	1	0	63	1.02
303798--303937	62	2.2	64	79	11	155	37	2	0	60	1.09
306451--306498	25	1.9	25	95	0	87	12	14	10	62	1.54
308178--308227	19	2.7	19	75	3	57	72	2	0	26	0.96
308177--308281	17	5.6	17	70	19	59	72	4	1	20	1.13
309339--309364	13	2.0	13	100	0	52	38	15	15	30	1.88
312215--312253	20	1.9	19	85	10	51	30	17	12	38	1.88
313261--313389	20	6.8	20	70	16	87	31	15	10	41	1.82
313300--313369	33	2.1	33	94	0	122	28	18	11	41	1.85
315670--315900	51	4.6	51	78	2	236	29	27	10	32	1.90
315837--316115	79	3.6	80	78	7	279	28	23	12	35	1.91
317355--317484	68	1.9	68	93	0	224	23	19	4	52	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
318733--318921	79	2.4	79	82	3	202	30	16	28	24	1.96
318937--319330	52	7.5	52	72	11	264	31	12	26	29	1.93
319145--319219	27	2.7	28	85	2	98	22	20	33	24	1.97
321673--321697	13	1.9	13	100	0	50	36	16	16	32	1.90
321737--321804	19	3.9	18	75	23	74	36	14	13	35	1.85
321759--321783	13	1.9	13	100	0	50	32	16	16	36	1.90
321740--321802	32	2.0	32	93	0	108	34	15	14	34	1.88
322643--323300	55	12.0	54	92	3	1023	22	20	29	28	1.98
330010--330043	17	2.0	17	88	0	50	5	26	17	50	1.69
336756--336963	79	2.6	79	83	3	240	28	16	30	24	1.96
336915--336991	28	2.8	28	84	4	84	23	19	33	23	1.97
336974--337365	52	7.4	51	72	13	274	31	12	25	29	1.93
339725--339749	13	1.9	13	100	0	50	36	16	16	32	1.90
339789--339856	19	3.9	18	76	23	83	38	14	11	35	1.83
339811--339835	13	1.9	13	100	0	50	32	16	16	36	1.90
339792--339854	32	2.0	32	96	0	117	36	15	12	34	1.86
342022--342046	12	2.1	12	100	0	50	0	16	0	84	0.63
346698--346736	15	2.5	16	83	4	53	25	10	10	53	1.66
348487--348542	2	28.0	2	100	0	112	50	0	0	50	1.00
351645--351675	16	1.9	16	93	0	53	74	0	9	16	1.07
351778--351838	18	3.3	18	79	6	61	57	3	0	39	1.15
352955--352981	2	13.5	2	100	0	54	0	51	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
353767--353808	18	2.3	18	76	11	50	47	0	0	52	1.00
354476--354504	6	4.8	6	100	0	58	13	0	0	86	0.58
354623--354684	21	3.0	21	85	4	81	62	0	0	37	0.95
354656--354707	16	3.2	16	74	17	54	53	0	0	46	1.00
354687--354736	21	2.3	22	80	13	59	58	2	0	40	1.10
355180--355212	2	16.5	2	100	0	66	51	0	0	48	1.00
355879--356076	73	2.8	68	77	7	189	32	2	10	54	1.48
355907--356088	73	2.5	70	83	5	211	31	2	9	56	1.44
355907--356089	71	2.6	70	79	10	199	31	2	10	56	1.45
360637--360710	30	2.5	30	75	4	78	25	28	16	29	1.97
360697--360810	59	1.9	59	85	3	158	24	27	11	36	1.90
360773--360880	31	3.6	29	80	13	105	23	26	10	39	1.86
360695--360895	60	3.4	60	76	9	164	22	28	10	37	1.88
360773--360897	30	4.1	31	77	11	134	21	26	10	41	1.85
360898--361013	32	3.6	31	73	10	99	32	26	19	20	1.97
366208--366261	20	2.7	20	80	8	65	33	22	7	37	1.82
367257--367431	53	3.3	52	82	10	219	25	26	9	38	1.87
367452--367628	81	2.2	81	84	4	232	25	28	10	35	1.89
371765--371827	34	1.9	33	90	6	101	44	11	12	31	1.78
374028--374077	21	2.3	21	80	10	57	56	4	18	22	1.58
375874--375904	15	2.1	15	93	0	53	48	16	22	12	1.80
377983--378020	13	2.9	13	96	0	67	34	18	15	31	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
378132--378177	21	2.2	20	81	11	58	32	19	4	43	1.71
379788--379855	29	2.3	29	94	0	118	33	2	20	42	1.67
380596--380660	21	3.6	19	73	26	70	44	15	12	27	1.82
380614--380639	13	2.0	13	100	0	52	38	15	15	30	1.88
380596--380660	34	2.0	33	93	6	114	44	15	12	27	1.82
382371--382423	21	2.7	20	82	8	72	32	15	13	39	1.85
383229--383273	23	1.9	24	86	4	65	40	2	0	57	1.11
388097--388149	20	2.7	20	84	0	61	58	0	0	41	0.98
388243--388304	16	3.7	16	72	14	54	59	1	1	37	1.17
388261--388304	20	2.2	21	80	12	56	59	2	2	36	1.23
388539--388581	21	2.0	21	82	8	52	65	0	0	34	0.93
388690--388776	28	3.1	28	79	11	81	65	1	1	32	1.07
388707--388785	26	3.0	25	78	14	79	65	1	2	30	1.13
388713--388800	17	4.8	18	75	18	74	65	1	2	30	1.12
388713--388779	9	7.6	8	73	17	53	67	1	1	29	1.09
388814--388891	25	3.0	26	74	11	79	57	3	0	38	1.17
388872--388922	26	2.0	26	84	7	68	74	3	1	19	1.07
395008--395051	20	2.1	22	87	8	65	40	18	4	36	1.71
395602--395635	3	11.3	3	93	0	59	35	0	35	29	1.58
402690--402754	20	3.6	20	73	26	81	30	18	21	29	1.97
402705--402767	13	5.3	13	69	21	57	31	17	19	31	1.95
402688--402768	33	2.5	33	100	0	162	29	17	20	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
407857--407999	52	2.8	52	78	14	136	29	11	16	41	1.84
408210--408329	62	1.9	63	93	1	206	28	10	18	42	1.84
408458--408490	14	2.4	14	90	10	50	42	0	3	54	1.15
408465--408676	31	6.4	33	69	23	99	45	1	2	50	1.25
408476--408519	20	2.2	20	84	8	54	43	0	4	52	1.22
408538--408619	27	3.0	26	80	15	78	51	1	0	47	1.08
408547--408643	9	10.6	9	68	20	58	50	1	1	47	1.14
408600--408660	11	5.5	11	72	14	54	49	3	1	45	1.28
408716--408770	28	2.0	28	85	7	76	34	3	0	61	1.13
408733--408815	28	2.9	28	78	1	76	43	0	1	55	1.07

Tables:   1   2   3   4   5   6