Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold393
Parameters: 2 7 7 80 10 50 1000
Length:  702984

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 633 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
660596--660654
23
2.5
23
81
10
66
35
3
0
61
1.13
661468--661587
53
2.3
51
82
13
140
45
2
0
52
1.14
661698--661738
3
13.7
3
100
0
82
68
0
0
31
0.90
662564--662609
18
2.3
20
85
10
60
58
6
0
34
1.24
663055--663093
2
19.5
2
100
0
78
51
0
0
48
1.00
663363--663401
2
19.5
2
89
0
60
46
2
0
51
1.14
669256--669295
20
2.0
21
85
5
55
40
15
25
20
1.90
669869--669899
15
2.1
15
93
0
53
38
9
29
22
1.86
670235--670285
19
2.6
20
87
12
79
29
15
23
31
1.95
670273--670325
20
2.7
20
100
0
106
32
18
11
37
1.87
670375--670427
20
2.6
21
90
3
81
30
18
11
39
1.86
671079--671550
52
9.1
52
72
8
259
31
14
26
26
1.95
671132--671554
155
2.7
154
82
6
487
31
14
27
26
1.95
671618--671686
31
2.2
31
86
0
93
26
23
23
27
2.00
671705--671778
36
2.0
37
84
2
96
43
13
20
22
1.87
671641--671943
32
9.4
31
74
12
159
30
17
26
26
1.98
672611--672642
14
2.4
14
94
5
57
37
6
25
31
1.81
673619--673686
9
7.3
9
76
17
59
7
5
2
83
0.88
673612--673691
16
4.6
16
73
26
58
7
7
2
82
0.92
673612--673691
17
4.6
17
73
12
65
7
7
2
82
0.92
673619--673670
19
2.7
19
77
11
61
5
5
3
84
0.86
690360--690488
52
2.5
52
94
0
222
29
17
17
34
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
691225--691436
52
4.2
52
77
12
217
34
16
24
24
1.95
691332--691421
43
2.1
43
95
0
162
32
17
23
26
1.97
691333--691401
21
3.2
21
66
18
61
30
17
24
27
1.97
691676--691847
29
6.0
27
78
8
101
23
16
30
29
1.97
691425--691845
57
7.1
58
74
12
291
26
16
29
28
1.97
691426--691845
30
14.0
30
78
9
313
26
16
29
28
1.97
693283--693403
1
121.0
1
75
0
98
1
1
9
86
0.70
693283--693403
20
6.2
20
79
10
133
1
1
9
86
0.70
693283--693404
27
4.7
24
79
17
129
1
1
10
86
0.72
693283--693403
40
3.1
39
83
9
156
1
1
9
86
0.70
693283--693403
21
5.8
20
77
15
129
1
1
9
86
0.70

Tables:   1   2   3   4   5   6

The End!