genome.fa.s397.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold397
Parameters: 2 7 7 80 10 50 1000
Length:  433447

Tables:   1   2   3   4   

This is table  3  of  4  ( 373 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
266761--266793	2	17.0	2	93	6	59	51	0	0	48	1.00
268491--268587	51	1.9	51	83	8	126	38	8	12	41	1.73
277098--277265	83	2.0	84	92	2	284	32	20	16	29	1.95
278203--278252	16	3.0	16	83	13	57	14	18	0	68	1.22
278196--278239	17	2.8	16	82	6	54	13	18	0	68	1.22
278470--278539	28	2.5	28	100	0	140	37	21	17	24	1.94
282852--283307	160	2.9	157	82	8	512	41	13	10	34	1.79
284069--284106	13	3.0	13	84	7	51	2	23	0	73	0.95
284742--285047	168	1.8	164	82	8	395	50	6	13	29	1.67
286794--286965	82	2.1	82	100	0	344	36	12	19	31	1.90
290126--290167	13	3.2	13	86	0	57	16	9	4	69	1.33
291285--291323	16	2.3	18	87	12	57	51	5	2	41	1.38
291827--291869	20	2.2	20	86	0	59	51	0	0	48	1.00
291861--291909	22	2.3	22	82	10	66	53	2	0	44	1.12
292034--292058	10	2.5	10	100	0	50	64	0	0	36	0.94
294237--294284	21	2.2	23	88	7	73	35	0	2	62	1.07
295578--295612	2	17.5	2	100	0	70	51	0	0	48	1.00
296682--296736	27	2.1	27	89	3	85	30	0	0	69	0.89
296667--296716	22	2.3	22	78	0	55	44	0	0	56	0.99
296697--296784	19	4.6	19	68	16	56	28	1	0	70	0.95
296698--296740	14	3.1	14	80	6	52	23	0	0	76	0.78
296682--296793	26	4.5	26	73	16	92	30	0	0	68	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
296752--296808	21	2.7	20	76	10	60	31	0	0	68	0.90
296712--296798	19	4.7	19	73	12	56	28	1	0	70	0.95
296697--296797	10	9.8	10	71	17	57	27	0	0	71	0.93
296707--296807	49	2.1	48	83	9	125	30	0	0	68	0.96
297131--297156	7	3.7	7	100	0	52	30	0	0	69	0.89
299244--299290	16	3.0	16	84	3	60	40	0	4	55	1.19
299498--299541	17	2.3	21	70	29	60	40	0	4	54	1.21
299477--299551	34	2.1	37	85	7	102	42	1	2	53	1.23
299504--299551	17	2.8	17	100	0	96	43	0	4	52	1.20
303485--303571	28	3.1	28	75	16	90	41	0	2	56	1.12
303773--304087	158	2.0	159	91	1	508	35	6	6	51	1.54
304318--304353	2	18.0	2	94	0	63	47	0	0	52	1.00
304565--304651	24	3.6	23	71	17	61	57	0	0	42	0.98
305733--305758	2	13.0	2	100	0	52	50	0	0	50	1.00
315541--315649	47	2.3	47	92	1	175	26	7	24	41	1.81
325615--325671	28	2.0	29	89	3	89	42	15	12	29	1.84
325936--325969	16	2.1	17	89	10	54	38	0	2	58	1.13
327255--327310	20	2.7	21	70	25	55	3	17	8	69	1.29
327446--327560	59	2.0	58	89	1	176	19	16	8	55	1.66
330043--330104	27	2.3	27	94	0	106	32	8	24	35	1.85
330063--330123	27	2.3	27	85	0	77	32	9	24	32	1.88
331333--331374	14	3.1	14	80	16	52	21	0	2	76	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
331396--331433	16	2.5	15	88	12	60	52	10	0	36	1.36
332477--332530	17	3.1	17	76	12	56	12	9	0	77	0.98
337872--338015	75	1.9	75	85	2	200	34	17	21	26	1.95
338075--338108	14	2.4	14	90	9	52	76	2	20	0	0.92
342576--342627	4	11.8	4	81	18	59	71	1	21	5	1.17
343504--343538	16	2.1	17	94	5	63	85	0	11	2	0.69
349523--349551	15	1.9	15	100	0	58	27	13	17	41	1.87
352409--352447	15	2.5	15	91	4	60	48	2	15	33	1.58
352774--352800	14	1.9	14	100	0	54	22	29	14	33	1.94
354685--355329	73	8.7	71	70	13	358	36	7	9	45	1.66
354799--355134	67	4.8	67	72	13	253	38	7	8	44	1.65
354685--355290	218	2.8	218	92	1	996	37	7	9	45	1.66
354685--355161	67	6.6	67	69	16	244	37	7	9	45	1.65
355366--355446	37	2.1	37	84	9	99	54	1	2	41	1.21
357065--357139	20	3.8	20	75	7	80	33	14	9	42	1.78
358041--358095	22	2.5	22	100	0	110	18	14	9	58	1.62
358494--358567	20	3.7	19	81	3	85	33	12	12	41	1.79
358494--358570	40	1.9	39	84	7	102	33	11	12	41	1.80
359480--359535	23	2.5	23	97	2	105	17	10	8	62	1.52
359480--359542	23	2.9	21	86	9	56	20	11	9	58	1.60
367745--367789	23	1.9	24	86	4	65	73	11	11	4	1.23
369147--369507	27	13.1	27	88	3	418	25	32	14	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
369122--369507	55	7.0	55	89	2	456	25	31	15	27	1.95
369147--369517	28	13.5	28	88	5	443	25	32	14	26	1.95
369505--370288	32	25.4	32	84	5	745	30	28	19	22	1.98
369985--370615	28	22.5	28	81	6	634	28	30	17	23	1.97
370378--370419	20	2.1	20	86	0	57	23	33	16	26	1.96
370706--370915	45	4.6	45	76	10	174	21	27	18	32	1.96
370740--370915	47	3.8	47	83	6	214	20	28	18	32	1.96
370706--370915	92	2.3	92	83	4	262	21	27	18	32	1.96
371293--371367	20	3.8	20	75	7	80	33	14	9	42	1.78
377768--377810	21	2.0	21	95	0	77	23	39	0	37	1.55
378515--378563	22	2.3	21	79	10	55	30	8	0	61	1.25
379589--379651	11	5.0	12	74	22	58	31	1	0	66	1.01
380037--380124	26	3.2	28	79	17	87	53	1	0	45	1.07
380038--380122	27	3.0	26	81	11	89	51	1	0	47	1.08
380147--380173	14	1.9	14	100	0	54	70	0	0	29	0.88
380081--380433	130	2.7	126	84	13	461	55	2	1	39	1.23
380687--380802	39	3.0	38	76	7	117	47	3	7	41	1.49
380813--381122	121	2.6	117	80	15	366	42	2	1	54	1.21
380989--381013	13	1.9	13	100	0	50	24	0	0	76	0.80
381000--381134	72	1.9	68	84	11	175	44	0	1	53	1.15
380813--381099	119	2.4	122	82	12	351	43	2	1	53	1.21
388457--388514	13	4.0	13	74	23	53	32	17	15	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
388471--388533	19	3.6	19	76	24	84	34	19	12	33	1.89
388458--388533	32	2.4	32	97	0	143	34	18	14	32	1.91
390704--390756	18	2.8	18	83	11	54	71	1	0	26	0.96
390709--390756	20	2.4	20	86	6	62	72	2	0	25	0.95
390872--390906	12	2.9	12	86	0	52	20	20	17	42	1.89
390853--390889	17	2.2	17	100	0	74	18	24	10	45	1.81
391651--391687	10	3.7	10	85	0	56	83	2	13	0	0.74
392138--392195	27	2.1	27	96	0	107	29	5	27	37	1.78
393085--393129	12	3.8	12	82	8	56	71	4	2	22	1.15
394972--395005	15	2.3	15	100	0	68	38	11	23	26	1.89
402552--402576	13	1.9	13	100	0	50	32	16	16	36	1.90
409652--409812	82	2.0	82	92	0	268	39	23	11	25	1.89
410170--410869	44	16.0	44	70	11	361	20	22	14	42	1.88
410913--411548	42	15.1	41	77	9	464	17	24	17	40	1.90
410941--411539	133	4.8	126	76	9	404	16	24	17	41	1.90
411077--411548	163	2.9	165	81	6	526	17	25	17	40	1.91
411076--411548	247	1.9	248	79	7	532	17	24	17	40	1.90
412802--412840	10	4.0	10	83	3	53	87	0	12	0	0.55
412799--412840	15	2.9	14	92	7	66	85	0	14	0	0.59
416667--416704	20	1.9	19	89	5	58	52	0	2	44	1.14
416689--416728	16	2.4	18	80	19	52	62	2	2	32	1.22
416887--416939	16	3.4	15	76	7	52	64	7	0	28	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
417479--417569	24	3.8	24	70	10	69	42	1	1	54	1.14
418598--418637	15	2.7	15	88	0	53	60	5	5	30	1.40
419785--419849	26	2.3	29	79	15	82	35	4	4	55	1.41
420392--420439	24	2.0	24	84	4	62	62	0	0	37	0.95
420789--421651	430	2.0	429	96	0	1602	41	6	11	41	1.65
421462--421487	11	2.4	11	100	0	52	84	0	0	15	0.62
421616--421677	30	2.1	30	81	6	72	56	4	1	37	1.30
422231--422273	21	2.0	21	100	0	86	46	13	9	30	1.75
423846--423883	2	19.0	2	88	0	58	47	47	2	2	1.30
425099--425132	17	1.9	18	88	5	52	52	0	0	47	1.00

Tables:   1   2   3   4