Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold401
Parameters: 2 7 7 80 10 50 1000
Length:  1910012

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  13  of  13  ( 1464 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1882346--1882397
13
4.0
13
80
7
61
36
0
0
63
0.95
1882346--1882389
11
3.5
13
84
12
56
34
0
0
65
0.93
1886907--1886954
19
2.4
21
86
6
73
39
0
10
50
1.37
1891818--1891883
27
2.4
27
92
0
105
25
10
18
45
1.81
1894457--1894502
21
2.1
22
84
4
58
30
19
30
19
1.97
1896367--1896424
24
2.3
26
88
5
84
31
25
15
27
1.96
1896414--1896479
27
2.4
27
89
0
96
24
9
19
46
1.78
1896465--1896510
24
1.9
24
91
8
76
23
8
21
45
1.80
1900717--1900787
27
2.6
27
84
6
81
25
7
21
46
1.76
1903361--1903406
21
2.1
22
84
4
58
30
19
30
19
1.97
1907049--1907075
2
13.5
2
100
0
54
0
51
0
48
1.00
1907706--1907739
18
1.9
17
88
5
50
20
73
2
2
1.09
1907739--1907789
24
2.3
21
80
10
57
9
76
1
11
1.10
1908005--1908051
25
1.9
25
86
4
69
17
63
4
14
1.45
1908594--1908691
51
1.9
50
82
12
119
14
71
2
12
1.23
1908760--1908831
15
4.9
15
69
16
60
12
75
1
11
1.12
1908760--1908841
31
2.7
30
77
11
87
12
74
1
12
1.14
1908920--1908986
18
3.5
19
78
13
75
1
79
1
17
0.89
1908931--1908986
18
3.1
18
84
5
76
1
82
1
14
0.84
1908931--1908991
10
5.8
10
75
9
50
1
81
1
14
0.84
1908928--1908975
9
5.2
9
80
12
53
2
83
0
14
0.74
1908931--1908991
16
3.9
15
80
6
59
1
81
1
14
0.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1909044--1909068
8
3.1
8
100
0
50
0
88
0
12
0.53
1909366--1909435
35
2.0
36
82
2
88
2
75
5
15
1.11

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13

The End!