genome.fa.s401.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold401
Parameters: 2 7 7 80 10 50 1000
Length:  1910012

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   

This is table  2  of  13  ( 1464 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
119886--119938	19	2.8	19	80	11	56	45	1	0	52	1.11
120262--120304	8	4.9	9	83	13	54	58	0	0	41	0.98
120262--120304	17	2.4	19	81	14	56	58	0	0	41	0.98
120263--120308	21	2.2	21	84	7	58	60	0	0	39	0.97
120836--120890	25	2.2	25	84	9	69	43	0	0	56	0.99
120789--120868	35	2.4	35	84	10	98	51	0	0	48	1.00
121778--121941	14	12.3	13	70	19	81	44	4	2	48	1.35
121778--121846	26	2.6	27	88	4	95	44	0	1	53	1.09
121784--121941	27	5.8	26	70	17	92	44	4	2	48	1.36
122402--122426	11	2.3	11	100	0	50	52	16	0	32	1.44
122557--122677	55	2.1	57	82	7	140	23	5	14	56	1.60
125058--125098	19	2.1	20	86	4	57	80	2	17	0	0.82
127119--127174	28	2.1	26	83	6	67	35	16	14	33	1.88
128303--128339	14	2.8	13	88	11	58	43	2	5	48	1.40
128291--128347	13	4.4	12	78	12	51	47	3	5	43	1.43
129575--129658	39	2.2	39	81	10	100	34	13	10	41	1.79
130999--131048	20	2.5	20	86	3	64	38	0	4	58	1.17
131165--131208	22	2.1	21	83	8	54	29	6	0	63	1.20
132696--132726	16	1.9	16	93	0	53	16	3	19	61	1.48
133831--133866	2	18.5	2	94	5	65	50	0	0	50	1.00
135544--135588	16	2.8	16	86	0	63	6	8	28	55	1.56
135580--135623	16	2.8	16	78	0	52	13	20	29	36	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
141823--141870	23	2.1	23	100	0	96	29	20	8	41	1.81
145500--145545	14	3.4	14	75	22	53	54	0	0	45	0.99
145788--145843	17	3.4	17	77	22	66	53	0	0	46	1.00
145788--145833	14	3.0	14	84	15	56	50	0	0	50	1.00
147565--147637	25	3.0	25	80	13	80	61	0	0	38	0.96
149373--149419	21	2.2	21	88	11	78	40	0	0	59	0.97
149372--149414	11	3.9	11	84	9	61	39	0	0	60	0.97
149810--149834	12	2.1	12	100	0	50	52	40	0	8	1.31
150367--150433	27	2.4	27	80	2	62	52	0	0	47	1.00
150569--150681	34	3.3	34	86	2	138	30	5	22	42	1.75
155130--155245	34	3.4	34	93	2	180	23	7	25	43	1.80
157026--157081	16	3.5	15	73	22	51	55	0	0	44	0.99
160741--160789	24	2.1	22	88	7	71	63	0	0	36	0.95
161066--161107	13	3.3	13	81	15	52	40	0	0	59	0.97
161527--161562	5	7.2	5	100	0	72	19	0	0	80	0.71
162418--162492	29	2.6	30	82	12	88	38	0	0	61	0.96
162424--162492	15	4.7	15	73	16	65	37	0	0	62	0.96
162426--162510	29	2.9	29	83	10	86	37	0	0	62	0.96
162471--162515	16	3.0	16	78	12	51	37	0	0	62	0.96
165347--165377	2	15.5	2	100	0	62	48	0	0	51	1.00
167206--167248	22	2.0	22	100	0	86	30	9	13	46	1.75
169934--169974	20	2.0	21	95	4	75	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
170950--170986	19	2.0	18	89	5	56	35	2	0	62	1.10
171242--171282	11	3.9	11	84	9	50	60	0	0	39	0.96
171580--171632	25	2.1	26	86	10	74	0	20	1	77	0.87
172702--172807	35	2.8	38	82	16	114	59	0	0	39	1.04
172789--172850	28	2.3	27	86	5	88	61	0	0	38	0.96
174593--174619	11	2.5	11	100	0	54	48	18	7	25	1.74
181365--181412	19	2.6	19	83	3	62	27	0	2	70	0.98
181539--181574	16	2.2	17	95	5	65	61	0	0	38	0.96
186562--186617	18	3.0	18	79	10	60	64	0	1	33	1.04
188125--188173	22	2.2	22	85	0	62	34	10	12	42	1.76
188179--188227	22	2.2	22	77	0	53	40	2	10	46	1.49
188338--188404	22	3.0	22	76	4	64	31	2	5	59	1.36
188798--188845	22	2.2	22	85	7	62	37	18	4	39	1.70
189006--189036	2	15.5	2	100	0	62	48	0	0	51	1.00
189177--189231	22	2.5	22	87	0	74	38	3	9	49	1.52
189201--189248	22	2.2	22	81	7	53	33	10	12	43	1.77
189389--189439	22	2.3	22	82	0	66	33	5	13	47	1.67
189401--189445	22	2.0	22	86	0	63	35	8	11	44	1.71
190060--190098	18	2.2	18	85	0	51	41	5	0	53	1.23
191702--191749	24	2.0	24	100	0	96	25	12	20	41	1.87
195185--195228	22	2.0	22	86	0	61	40	15	9	34	1.79
196921--196978	30	1.9	30	86	6	82	65	0	1	32	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
197123--197174	24	2.3	22	86	6	68	69	0	0	30	0.89
202180--202209	15	1.9	16	93	6	53	30	3	0	66	1.07
202284--202320	15	2.5	15	91	8	58	21	8	8	62	1.49
202889--202959	22	3.1	23	75	20	78	39	1	1	57	1.16
204089--204118	7	4.3	7	91	0	51	73	10	0	16	1.09
204274--204306	15	2.1	17	88	11	52	54	0	3	42	1.15
206094--206123	2	15.0	2	100	0	60	50	0	50	0	1.00
209321--209346	2	13.0	2	100	0	52	0	50	0	50	1.00
209981--210016	18	1.9	18	88	5	54	47	0	0	52	1.00
210013--210040	4	7.0	4	100	0	56	25	0	0	75	0.81
210696--210729	16	2.1	16	89	10	52	32	0	0	67	0.91
212103--212160	23	2.5	24	77	8	66	56	6	0	36	1.26
213442--213473	16	2.0	16	93	0	55	46	0	0	53	1.00
213444--213530	40	2.1	41	84	12	117	37	1	0	60	1.04
213481--213523	17	2.5	18	81	11	54	34	2	0	62	1.08
213798--213830	2	16.5	2	100	0	66	51	0	0	48	1.00
220643--220702	28	2.1	28	84	6	77	48	1	1	48	1.21
220594--220685	44	2.1	44	89	0	148	46	1	4	47	1.29
221118--221157	2	20.0	2	100	0	80	50	0	0	50	1.00
221157--221182	2	13.0	2	100	0	52	50	0	50	0	1.00
227751--227777	2	13.5	2	100	0	54	0	0	48	51	1.00
227789--227817	2	14.5	2	100	0	58	48	0	51	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
230669--230741	6	12.2	6	71	11	60	2	42	6	47	1.44
230669--230741	18	4.1	18	77	7	76	2	42	6	47	1.44
233682--233743	21	3.1	19	72	9	52	48	0	1	50	1.10
233695--233790	50	1.9	51	81	8	117	54	1	1	43	1.14
234404--234446	15	2.9	14	82	6	50	41	0	0	58	0.98
237163--237219	19	3.0	18	79	7	60	40	0	0	59	0.97
237437--237486	23	2.2	23	92	0	82	48	16	28	8	1.74
237894--237941	12	4.2	12	82	7	57	27	4	0	68	1.07
238007--238064	9	6.6	9	92	4	84	68	0	0	31	0.89
238113--238138	1	26.0	1	100	0	52	100	0	0	0	0.00
238761--238813	19	2.8	18	75	8	52	52	0	1	45	1.11
238904--238963	32	1.9	31	82	3	75	38	3	0	58	1.15
239315--239348	17	2.0	17	94	0	59	61	0	0	38	0.96
243314--243356	14	3.0	14	76	6	50	60	0	2	37	1.10
243527--243600	21	3.4	22	78	12	73	33	1	1	63	1.11
243584--243623	16	2.6	16	88	4	55	50	2	0	47	1.14
243644--243687	17	2.7	16	75	6	52	61	0	18	20	1.35
244550--244618	7	9.9	7	78	9	54	49	0	1	49	1.09
244550--244616	22	2.9	24	78	10	70	49	0	1	49	1.10
244674--244730	15	4.1	14	80	13	57	59	0	0	40	0.97
244703--244733	12	2.6	12	89	0	53	64	0	0	35	0.94
244676--244728	27	2.0	26	85	10	72	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
245312--245340	3	9.7	3	100	0	58	68	0	0	31	0.89
245533--245631	33	3.0	34	66	16	89	24	25	18	32	1.97
246508--246627	11	11.6	11	73	16	82	39	0	0	60	0.97
246562--246639	13	5.8	13	75	17	61	37	1	1	60	1.13
246512--246605	18	5.1	18	74	14	84	37	0	0	62	0.95
246513--246626	46	2.3	49	82	10	128	39	0	0	60	0.97
246508--246604	5	19.2	5	73	17	76	38	0	0	61	0.96
249015--249048	15	2.2	16	89	5	52	44	0	0	55	0.99
249543--249588	18	2.5	19	89	6	69	32	6	0	60	1.22
250034--250298	144	1.8	145	83	2	354	39	7	2	50	1.43

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13