genome.fa.s403.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold403
Parameters: 2 7 7 80 10 50 1000
Length:  416698

Tables:   1   2   3   4   

This is table  3  of  4  ( 395 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
292017--292076	28	2.1	28	93	0	102	40	3	16	40	1.65
293030--293067	2	19.0	2	94	0	67	47	2	0	50	1.15
293845--293874	9	3.4	9	90	9	53	10	0	0	90	0.47
293845--293874	8	3.6	8	95	4	51	10	0	0	90	0.47
294065--294126	29	2.2	27	83	13	81	45	1	4	48	1.33
296834--297129	147	2.0	147	94	0	520	38	5	3	52	1.43
300474--300512	21	1.9	20	89	5	60	35	12	12	38	1.82
300806--300862	28	2.0	27	83	12	71	50	0	0	49	1.00
300833--300868	19	1.9	19	94	5	65	52	0	0	47	1.00
303233--303293	24	2.5	25	86	7	90	44	0	0	55	0.99
303679--303708	14	2.2	13	94	5	51	0	0	16	83	0.65
307643--307746	11	10.0	11	71	20	66	74	0	25	0	0.83
307647--307723	7	11.6	7	74	19	58	75	0	24	0	0.81
307651--307744	42	2.2	41	80	17	104	74	0	25	0	0.82
307650--307744	31	3.1	33	84	11	114	74	0	25	0	0.82
307656--307746	24	3.8	24	79	5	94	74	0	25	0	0.82
308540--308566	13	2.1	13	100	0	54	29	14	14	40	1.86
308521--308585	32	2.0	32	90	3	103	26	16	16	40	1.90
308550--308606	19	2.9	19	89	2	87	31	15	17	35	1.92
308651--308681	13	2.4	13	94	0	53	35	16	12	35	1.87
310270--310307	3	12.7	3	94	0	67	31	0	34	34	1.58
316695--316907	109	2.0	107	94	4	376	38	1	26	33	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
317443--317469	13	2.1	13	100	0	54	29	14	14	40	1.86
317424--317488	32	2.0	32	90	3	103	26	16	16	40	1.90
317453--317509	19	2.9	19	89	2	87	31	15	17	35	1.92
317931--317955	11	2.3	11	100	0	50	36	8	28	28	1.85
318454--318545	47	2.0	47	84	4	123	38	31	16	14	1.88
318463--318597	16	8.5	16	72	11	98	39	29	16	14	1.88
318659--318700	21	2.0	22	85	4	59	50	0	4	45	1.23
318656--318744	46	1.9	45	82	8	108	46	0	5	48	1.26
319060--319093	16	2.1	16	88	0	50	29	2	0	67	1.05
319553--319676	53	2.3	53	79	8	126	39	24	12	24	1.89
320022--320061	20	1.9	19	85	14	53	65	0	0	35	0.93
320167--320205	19	2.0	21	90	10	64	64	5	2	28	1.28
321548--321590	2	21.5	2	100	0	86	51	0	0	48	1.00
321993--322037	20	2.2	21	88	4	65	57	0	8	33	1.30
322761--322807	25	2.0	25	87	8	71	55	2	0	42	1.12
322770--322957	39	4.8	40	67	13	131	52	1	1	44	1.20
322759--322995	116	2.1	113	88	7	343	53	1	1	43	1.21
322975--323019	20	2.3	20	85	7	58	53	0	0	46	1.00
323425--323489	21	3.6	19	73	26	70	44	15	12	27	1.82
323443--323468	13	2.0	13	100	0	52	38	15	15	30	1.88
323425--323489	34	2.0	33	93	6	114	44	15	12	27	1.82
325690--325739	21	2.3	21	80	10	57	56	4	18	22	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
327537--327567	15	2.1	15	93	0	53	48	16	22	12	1.80
329627--329651	13	1.9	13	100	0	50	32	20	16	32	1.94
329763--329808	21	2.2	20	81	11	58	32	19	4	43	1.71
332197--332222	13	2.0	13	100	0	52	38	15	15	30	1.88
332179--332277	34	3.0	34	97	2	184	45	15	12	27	1.81
332231--332256	13	2.0	13	100	0	52	38	15	15	30	1.88
333108--333138	15	2.1	15	100	0	62	29	0	0	70	0.87
333261--333297	11	3.4	11	84	0	56	37	0	0	62	0.96
333558--333594	11	3.4	11	84	0	56	37	0	0	62	0.96
333149--333790	290	2.2	286	86	6	873	38	9	7	45	1.64
337378--337626	83	2.9	84	80	7	250	32	18	6	42	1.76
341395--341706	167	1.9	167	84	4	425	32	10	8	48	1.68
341454--341804	164	2.1	166	80	5	372	31	10	9	48	1.69
341454--341848	164	2.4	165	78	5	350	32	10	9	47	1.70
342356--342389	13	2.7	13	86	4	52	82	0	17	0	0.67
342359--342397	19	2.1	18	85	4	51	84	0	12	2	0.72
342669--342714	24	1.9	24	95	0	83	23	4	23	47	1.69
343256--343287	17	1.9	16	93	6	55	78	0	0	21	0.76
343301--343566	140	1.9	142	84	1	356	34	8	11	46	1.70
343663--344186	155	3.4	154	75	9	465	24	16	19	39	1.92
349512--349564	14	3.6	14	75	9	52	58	0	0	41	0.98
349488--349538	24	2.1	24	82	7	59	52	0	1	45	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
349997--350047	24	2.0	26	85	11	70	50	0	0	49	1.00
349997--350047	25	2.0	27	85	11	72	50	0	0	49	1.00
349976--350174	65	3.0	65	71	14	165	49	2	1	47	1.21
350581--350605	3	8.3	3	100	0	50	68	0	32	0	0.90
350746--350774	2	14.5	2	100	0	58	51	0	0	48	1.00
350830--350858	2	14.5	2	100	0	58	51	0	0	48	1.00
354585--354626	22	2.1	19	86	13	57	40	45	4	9	1.58
354647--354798	16	9.5	16	76	2	117	40	29	13	15	1.86
355891--355957	16	4.2	16	78	0	71	44	28	16	10	1.80
357639--357699	33	1.9	33	83	9	83	36	14	9	39	1.80
358138--358171	3	11.3	3	100	0	68	67	0	0	32	0.91
358845--358875	2	15.5	2	93	0	53	48	3	0	48	1.17
359704--359765	32	1.9	32	87	6	90	43	12	3	40	1.59
360026--360257	112	2.1	114	92	4	391	55	2	0	41	1.20
360064--360275	38	5.6	39	69	23	148	54	1	0	43	1.12
360210--360314	56	1.9	55	84	5	140	54	0	0	44	1.06
360625--360661	11	3.4	11	84	0	56	37	0	0	62	0.96
360922--360958	11	3.4	11	84	0	56	37	0	0	62	0.96
360514--361150	291	2.2	292	87	3	931	38	9	7	45	1.65
362190--362214	13	1.9	13	100	0	50	36	16	8	40	1.77
364638--364752	51	2.2	52	81	4	135	32	26	7	33	1.85
364741--364809	28	2.5	28	82	0	93	23	33	15	27	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
364761--365095	158	2.1	158	83	3	424	25	25	16	32	1.96
364761--365099	79	4.3	78	84	4	369	25	25	16	32	1.96
368591--369300	92	7.8	91	80	7	757	33	16	7	42	1.77
368591--369300	91	7.8	92	79	8	758	33	16	7	42	1.77
368614--369300	184	3.8	183	87	4	867	33	16	7	42	1.76
369777--369816	20	2.0	21	90	5	64	52	2	0	45	1.14
369888--369941	23	2.4	22	82	17	67	62	0	0	37	0.95
369888--369943	22	2.5	23	80	11	64	62	0	0	37	0.95
370163--370214	14	3.6	15	80	12	56	51	5	0	42	1.25
375266--375692	49	8.8	49	78	5	400	34	16	22	25	1.95
375218--375642	98	4.3	98	80	4	449	34	16	24	24	1.95
375737--376033	28	10.4	29	80	4	275	22	16	27	33	1.95
376398--376479	37	2.2	37	100	0	164	43	14	15	25	1.85
384555--384683	52	2.5	52	96	0	231	30	17	17	34	1.93
384555--384703	52	2.9	51	89	4	219	31	17	17	33	1.93
384692--384716	13	1.9	13	100	0	50	36	16	16	32	1.90
384757--384823	33	2.0	33	85	0	89	41	14	10	32	1.80
384779--384803	13	1.9	13	100	0	50	32	16	16	36	1.90
388353--388411	14	4.0	14	82	8	64	52	1	1	44	1.21
389448--389472	3	8.3	3	100	0	50	68	0	32	0	0.90
390171--390211	20	2.0	20	86	9	57	43	4	0	51	1.23
390423--390458	2	18.0	2	100	0	72	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
391368--391452	42	2.0	42	95	0	152	43	12	10	32	1.77
392373--392447	32	2.2	34	86	11	102	32	4	14	49	1.62
392765--392809	21	2.1	21	84	8	56	71	0	2	26	0.98
393093--393117	11	2.3	11	100	0	50	36	8	28	28	1.85
393554--393595	22	2.1	19	86	13	57	40	45	4	9	1.58
393616--393766	16	9.4	16	76	5	108	40	29	14	15	1.87
394786--394849	16	4.0	16	79	0	65	40	26	15	17	1.89
394793--394856	32	2.0	33	87	3	94	43	26	12	17	1.84
394812--394859	16	2.9	16	81	3	60	45	27	12	14	1.81
395333--395375	20	2.1	21	83	12	54	62	2	2	32	1.20

Tables:   1   2   3   4