Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold403
Parameters: 2 7 7 80 10 50 1000
Length:  416698

Tables:   1   2   3   4   

This is table  4  of  4  ( 395 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
395359--395435
32
2.3
35
78
14
92
53
2
0
44
1.14
395400--395437
9
4.2
9
86
10
51
52
0
0
47
1.00
395857--395929
31
2.4
30
79
6
92
45
8
10
35
1.69
396525--396586
33
1.9
31
87
6
88
35
16
9
38
1.81
396593--396618
3
8.7
3
100
0
52
65
0
0
34
0.93
396693--396723
2
15.5
2
100
0
62
51
0
0
48
1.00
397201--397435
50
4.7
50
90
0
373
29
21
17
30
1.97
401785--401970
50
3.7
49
82
6
205
31
19
15
33
1.93
401785--401972
100
1.9
100
84
6
256
31
19
15
33
1.93
402080--402113
3
11.3
3
100
0
68
67
0
0
32
0.91
402531--402560
3
10.0
3
92
0
51
70
0
30
0
0.88
402705--402740
2
18.0
2
100
0
72
50
0
0
50
1.00
402994--403034
2
20.5
2
100
0
82
51
0
0
48
1.00
403295--403335
20
2.0
20
86
9
57
43
4
0
51
1.23
405429--405495
33
2.0
34
86
13
95
37
2
11
47
1.56
405429--405474
15
2.8
17
74
16
51
43
0
10
45
1.39
405814--405858
21
2.1
21
84
8
56
71
0
2
26
0.98
406141--406165
11
2.3
11
100
0
50
36
8
28
28
1.85
406690--406793
32
3.2
32
81
0
118
40
28
15
15
1.88
406690--406792
48
2.1
48
83
0
125
40
28
15
15
1.88
406689--406793
16
6.6
16
80
0
93
40
28
16
15
1.88
408250--408289
20
1.9
19
85
14
53
65
0
0
35
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
408422--408490
20
3.4
21
71
20
58
53
7
1
37
1.38
408922--408996
31
2.4
31
75
0
78
44
10
10
34
1.74
409611--409643
3
11.0
3
100
0
66
66
0
0
33
0.92
409720--409756
2
18.5
2
100
0
74
51
0
0
48
1.00
411901--412094
41
5.1
38
67
27
108
54
2
0
42
1.18
411989--412086
23
4.2
24
68
18
71
53
2
0
44
1.12
411890--412126
115
2.1
115
92
4
397
53
2
0
43
1.20
412058--412144
42
2.0
42
83
14
108
50
1
1
47
1.16
412113--412150
18
2.1
18
85
14
51
57
0
0
42
0.98
411873--412161
115
2.5
113
84
8
338
52
2
1
44
1.19
412116--412213
34
2.9
32
75
17
101
57
0
0
42
0.99
412884--412998
20
5.8
20
81
0
140
34
12
11
41
1.78
412884--412990
40
2.7
40
98
0
205
33
12
12
42
1.79

Tables:   1   2   3   4

The End!