genome.fa.s408.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold408
Parameters: 2 7 7 80 10 50 1000
Length:  555187

Tables:   1   2   3   

This is table  3  of  3  ( 293 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
432678--432748	18	3.6	18	74	20	61	15	42	0	42	1.47
435860--452751	474	35.6	476	83	3	19721	35	14	18	31	1.91
439571--445441	158	37.2	158	65	14	816	36	14	18	30	1.91
453501--453526	13	2.0	13	100	0	52	30	15	15	38	1.88
453565--453637	20	3.6	20	81	9	76	30	16	13	39	1.87
453585--453640	20	2.8	20	89	5	78	30	16	14	39	1.88
454255--454334	20	4.1	20	87	9	128	26	33	3	36	1.74
454255--454334	39	2.0	40	90	7	128	26	33	3	36	1.74
456142--456167	13	2.0	13	100	0	52	38	15	15	30	1.88
458246--458276	15	2.1	15	93	0	53	12	22	16	48	1.80
462339--462364	13	2.0	13	100	0	52	30	15	15	38	1.88
462738--472727	474	21.0	477	84	4	12018	36	14	18	30	1.91
467233--468851	158	10.2	159	66	11	478	36	15	18	30	1.91
469800--469849	19	2.6	19	90	3	73	54	10	22	14	1.69
477701--477754	15	3.4	15	76	14	63	11	48	0	40	1.39
477702--477802	42	2.8	33	74	23	103	12	42	0	44	1.42
477717--477811	42	2.3	42	85	7	138	11	40	0	48	1.40
479781--480486	359	2.0	355	87	3	1006	37	14	17	30	1.89
481205--481269	33	2.0	32	85	8	87	35	15	12	36	1.85
481332--481389	24	2.4	24	79	0	62	25	27	6	39	1.81
483489--483544	21	2.6	22	78	15	64	51	3	23	21	1.63
485109--485135	13	2.1	13	100	0	54	29	14	14	40	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
485090--485154	32	2.0	33	87	3	96	26	15	15	43	1.86
485119--485175	19	2.9	19	89	2	87	31	15	17	35	1.92
485205--485257	20	2.7	20	88	5	72	35	15	16	32	1.90
492715--492747	16	2.1	16	94	0	57	39	0	33	27	1.57
493380--493406	13	2.1	13	100	0	54	29	14	14	40	1.86
493361--493425	33	2.0	32	87	3	94	27	16	13	41	1.87
494404--494450	20	2.2	22	78	17	55	29	0	17	53	1.44
496240--496302	33	1.9	32	87	9	92	33	12	14	39	1.84
497289--497338	18	2.8	18	81	6	57	10	42	0	48	1.37
497323--497395	33	2.2	33	90	4	112	15	41	0	43	1.46
499756--499901	77	1.9	77	90	2	231	38	12	17	31	1.87
499271--500371	556	2.0	551	86	4	1522	35	13	18	32	1.90
499822--504715	159	30.9	157	65	14	1411	35	14	18	31	1.91
499822--505108	476	11.2	476	85	3	6727	35	14	18	31	1.91
509362--509435	19	3.7	19	85	8	87	36	14	18	29	1.91
509874--519415	159	60.1	158	66	12	1806	36	13	18	31	1.90
509874--511037	478	2.4	475	86	1	1578	37	12	18	31	1.89
511043--521514	476	21.9	476	84	3	12349	36	14	18	31	1.90
519728--521366	159	10.3	156	68	12	579	37	14	17	31	1.89
521548--523711	159	13.6	158	65	14	529	37	13	17	30	1.89
521518--524030	476	5.3	474	84	3	2915	38	13	17	30	1.89
523886--524224	188	1.8	187	85	3	450	38	16	17	27	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
524821--524846	12	2.2	12	100	0	52	34	23	19	23	1.96
524054--540902	475	35.5	475	83	3	19618	36	14	18	31	1.91
530335--540902	159	66.8	160	64	14	1478	36	14	18	31	1.90
541715--545480	159	23.8	158	65	10	609	36	13	18	31	1.90
541699--546197	476	9.5	476	83	2	5006	36	13	18	31	1.90
546766--546832	20	3.7	20	68	25	67	35	11	14	37	1.84
546766--546847	33	2.5	33	100	0	164	36	12	14	36	1.84
546904--546930	13	2.1	13	100	0	54	40	14	14	29	1.86
546939--547067	52	2.5	52	96	0	240	36	17	17	28	1.93

Tables:   1   2   3

The End!