genome.fa.s423.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold423
Parameters: 2 7 7 80 10 50 1000
Length:  617052

Tables:   1   2   3   4   5   6   

This is table  3  of  6  ( 618 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
235418--235456	18	2.2	17	86	13	53	25	5	0	69	1.09
235451--235505	26	2.1	26	83	6	67	52	1	0	45	1.11
236555--236606	19	2.9	18	77	13	54	34	0	0	65	0.93
236555--236622	31	2.3	28	80	14	75	36	0	1	61	1.05
236616--236661	16	2.9	16	75	21	51	45	0	2	52	1.13
237297--237348	17	3.0	18	84	13	65	38	3	1	55	1.29
237843--237886	22	2.0	22	95	0	79	36	6	9	47	1.62
238045--238105	30	2.0	30	87	9	88	6	14	36	42	1.72
238291--238359	26	2.8	25	74	23	65	49	4	2	43	1.37
238628--238691	16	4.0	16	74	8	67	40	0	3	56	1.15
241483--241559	15	5.1	15	70	16	52	53	1	2	42	1.23
243011--243051	17	2.4	17	79	0	55	0	12	7	80	0.90
245259--245286	12	2.3	12	100	0	56	64	0	0	35	0.94
246005--246092	10	8.9	10	71	20	53	60	2	0	37	1.10
246005--246090	19	4.3	20	72	16	72	60	2	0	37	1.10
247368--247426	31	1.9	31	82	6	75	55	11	3	28	1.52
247492--247776	129	2.2	130	81	4	326	51	10	10	27	1.69
247492--247871	132	2.9	127	78	5	341	50	9	11	28	1.69
248290--248328	17	2.4	17	86	4	53	56	10	17	15	1.66
249454--249496	14	2.9	14	80	19	52	51	0	0	48	1.00
250873--251050	11	16.5	11	67	16	61	38	1	1	58	1.16
251194--251233	19	2.2	19	90	4	64	32	5	0	62	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
251773--251816	19	2.3	19	80	7	54	54	0	2	43	1.12
260867--260894	2	14.0	2	100	0	56	50	0	0	50	1.00
261989--262021	11	3.1	11	86	8	50	39	0	0	60	0.97
263621--263739	10	12.7	10	66	19	53	43	2	0	52	1.20
263615--263666	21	2.5	21	81	3	61	40	3	0	55	1.18
263935--264011	32	2.6	30	72	11	77	40	2	2	54	1.28
264419--264470	26	2.0	26	84	0	68	65	0	3	30	1.10
264572--264646	30	2.3	32	84	13	93	37	0	0	62	0.95
264906--264935	1	30.0	1	100	0	60	0	100	0	0	0.00
272207--272233	13	2.1	13	100	0	54	22	7	29	40	1.81
272243--272321	19	4.0	19	73	12	61	37	0	2	59	1.11
274841--274896	25	2.2	25	83	0	67	48	0	0	51	1.00
275617--275696	35	2.3	35	77	0	97	55	2	0	42	1.13
275831--275904	38	2.0	38	84	7	100	36	1	0	62	1.04
276520--276603	29	3.0	27	73	14	82	41	0	2	55	1.12
276975--277022	19	2.6	19	84	15	66	50	0	2	47	1.12
276971--277028	19	2.8	20	76	23	59	51	0	1	46	1.11
277021--277051	16	1.9	16	93	0	53	67	0	0	32	0.91
277620--277653	15	2.2	15	89	5	50	44	0	0	55	0.99
277620--277677	16	3.7	15	84	6	62	39	0	0	60	0.97
278085--278136	23	2.3	23	71	15	54	53	3	0	42	1.19
278997--279052	16	3.4	17	80	11	64	37	1	0	60	1.07
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
279672--279739	19	3.5	19	81	13	77	39	0	1	58	1.07
279672--279757	20	4.4	20	75	18	74	39	1	2	56	1.19
279665--279748	29	2.9	28	76	10	80	41	1	1	55	1.15
280122--280160	18	2.1	18	95	4	69	48	0	5	46	1.24
280159--280189	16	1.9	16	93	0	53	61	0	6	32	1.21
280737--280783	19	2.5	20	83	16	64	55	0	0	44	0.99
280773--280810	16	2.5	15	83	8	58	36	0	0	63	0.95
280773--280811	20	2.0	20	84	0	51	35	0	0	64	0.94
280791--280866	31	2.5	31	80	17	81	36	2	0	60	1.11
280790--280865	36	2.1	38	85	9	104	38	2	0	59	1.12
282176--282350	87	2.0	87	91	2	280	40	17	20	21	1.92
286149--286436	143	2.0	143	95	0	522	32	22	17	28	1.96
287167--287192	4	6.5	4	100	0	52	23	0	0	76	0.78
288876--288911	19	1.9	18	88	5	54	38	0	8	52	1.32
289803--289853	25	2.0	25	96	0	93	58	7	5	27	1.49
290031--290068	3	12.7	3	100	0	76	31	0	0	68	0.90
293371--293412	3	14.0	3	100	0	84	66	0	0	33	0.92
293906--294088	34	5.4	34	88	0	260	25	7	26	39	1.83
294393--294455	19	3.3	19	90	0	90	28	17	19	34	1.94
298521--298705	34	5.5	34	88	0	264	25	7	26	40	1.82
299067--299137	23	3.2	23	76	13	76	50	0	1	47	1.09
299077--299117	21	2.0	21	90	9	66	41	0	0	58	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
300390--300438	21	2.3	21	82	6	64	48	2	4	44	1.33
303263--303302	2	20.0	2	100	0	80	50	0	0	50	1.00
303745--303791	22	2.1	22	92	0	76	40	19	10	29	1.85
304378--304415	18	2.1	18	95	0	67	15	28	15	39	1.89
304773--304810	16	2.3	17	86	4	51	47	5	0	47	1.24
306604--306679	30	2.6	30	87	6	102	38	1	2	57	1.21
308185--308230	16	2.9	16	79	17	51	13	17	2	67	1.33
315948--316129	34	5.4	34	86	3	235	23	7	28	40	1.82
315948--316129	67	2.7	67	92	0	283	23	7	28	40	1.82
315948--316129	101	1.8	100	89	3	285	23	7	28	40	1.82
316434--316496	19	3.3	19	90	0	90	28	17	19	34	1.94
320562--320745	34	5.5	34	86	3	239	23	7	27	40	1.82
320562--320745	67	2.7	67	92	0	287	23	7	27	40	1.82
320562--320745	101	1.8	100	89	3	289	23	7	27	40	1.82
321413--321456	5	9.4	5	90	5	58	22	0	0	77	0.77
324566--324615	3	17.0	3	91	4	84	66	2	0	32	1.03
326348--326387	2	20.5	2	94	5	73	52	0	0	47	1.00
326482--326519	2	19.0	2	100	0	76	50	0	0	50	1.00
326871--326898	3	9.3	3	100	0	56	67	0	0	32	0.91
329601--329642	21	2.0	21	100	0	84	28	14	4	52	1.62
336336--336371	18	2.0	18	88	0	54	16	33	27	22	1.95
338248--338531	57	5.0	57	83	2	320	16	22	33	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
345100--345135	2	18.5	2	88	5	56	52	0	0	47	1.00
350800--350973	87	2.0	89	85	2	235	29	10	21	37	1.87
350989--351758	131	5.9	132	80	6	681	48	9	13	29	1.74
351707--351806	47	2.1	47	88	3	148	47	12	17	24	1.81
351754--352129	131	2.8	131	84	5	436	46	11	13	28	1.78
351755--352129	133	2.8	132	83	3	414	46	11	13	28	1.77
352117--352149	2	16.5	2	100	0	66	51	0	0	48	1.00
351988--352302	153	2.1	151	84	4	409	49	9	9	31	1.68
352272--352318	2	23.5	2	100	0	94	51	0	0	48	1.00
356102--356152	18	2.6	19	74	20	52	56	0	3	39	1.18
357363--357394	3	10.7	3	100	0	64	31	0	0	68	0.90
357966--358000	17	2.0	18	94	5	63	37	0	11	51	1.38
358116--358170	15	3.5	15	79	20	60	40	0	0	60	0.97
358993--359017	2	12.5	2	100	0	50	52	0	0	48	1.00
362538--362632	34	2.8	34	95	1	163	38	36	0	24	1.56
368376--368410	12	2.7	13	91	8	54	0	14	0	85	0.59
370881--370974	34	2.7	34	91	1	152	40	36	0	23	1.55
373700--373757	29	2.0	29	83	12	75	63	0	0	36	0.94
374276--374315	2	20.0	2	100	0	80	50	0	0	50	1.00
375141--375185	14	3.2	14	83	0	54	35	15	13	35	1.87
376202--376242	21	2.0	21	85	0	55	43	14	4	36	1.67
376383--376416	2	17.0	2	100	0	68	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
377658--377698	19	2.2	18	91	4	64	60	2	4	31	1.30
377902--377948	22	2.1	22	84	7	60	51	0	0	48	1.00
378865--378910	2	23.0	2	90	0	74	50	0	2	47	1.13
381120--381151	2	16.0	2	100	0	64	50	0	0	50	1.00
381940--381982	13	3.3	13	81	9	52	41	4	2	51	1.35
382258--382283	2	13.0	2	100	0	52	50	0	0	50	1.00
382464--382494	9	3.4	9	95	0	53	25	0	0	74	0.82
384304--384339	2	18.0	2	88	0	54	50	0	2	47	1.15
386808--386884	32	2.3	33	80	13	86	55	6	1	36	1.34
386833--386887	17	3.4	17	70	25	55	58	7	0	34	1.26

Tables:   1   2   3   4   5   6