genome.fa.s423.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold423
Parameters: 2 7 7 80 10 50 1000
Length:  617052

Tables:   1   2   3   4   5   6   

This is table  4  of  6  ( 618 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
388549--388584	18	2.0	18	100	0	72	22	33	22	22	1.97
389149--389189	21	2.0	21	90	0	64	60	19	7	12	1.54
389449--389501	21	2.5	21	84	0	61	52	0	11	35	1.37
390634--390673	16	2.5	16	88	8	55	15	2	0	82	0.77
391831--391859	2	14.5	2	100	0	58	51	0	0	48	1.00
396858--396895	11	3.5	11	82	17	53	65	0	2	31	1.06
396901--396955	16	3.3	18	70	17	55	50	0	0	49	1.00
396906--396952	17	3.0	15	77	17	51	51	0	0	48	1.00
397310--397350	19	2.1	20	86	4	57	58	4	0	36	1.20
398868--398923	29	2.0	28	89	3	85	37	3	1	57	1.27
399345--399443	44	2.2	44	82	3	128	48	8	8	35	1.62
401325--401359	17	2.1	17	94	0	61	48	2	0	48	1.16
401757--401797	21	2.0	21	90	0	64	58	4	0	36	1.20
401892--401924	2	16.5	2	100	0	66	51	0	0	48	1.00
401974--402028	14	3.6	15	76	11	58	65	1	1	30	1.13
402023--402070	17	2.9	16	74	17	53	50	2	0	47	1.12
402435--402475	19	2.1	20	86	4	57	58	2	0	39	1.11
402513--402585	27	2.6	27	77	12	67	57	1	0	41	1.07
402679--402707	15	2.0	15	93	6	51	62	3	0	34	1.12
404000--404055	29	2.0	28	89	3	85	37	3	1	57	1.27
404477--404575	44	2.2	44	81	0	126	48	8	9	34	1.64
406678--406788	57	1.9	57	94	0	195	37	15	11	35	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
407063--407107	2	22.5	2	100	0	90	51	0	0	48	1.00
407140--407236	31	3.1	31	80	12	101	59	0	2	38	1.09
407157--407301	20	7.2	20	65	23	56	59	0	1	39	1.06
407145--407302	61	2.6	61	74	19	161	60	0	1	38	1.05
407191--407240	18	2.9	18	77	11	52	54	0	0	46	1.00
407146--407241	32	3.1	31	82	11	117	59	0	1	39	1.04
407685--407756	29	2.6	26	79	12	72	55	5	0	38	1.23
407789--407864	32	2.4	31	78	8	82	31	1	0	67	0.99
409166--409221	29	2.0	28	89	3	85	37	3	1	57	1.27
409643--409741	44	2.2	44	81	0	126	47	8	10	34	1.67
411840--411950	57	1.9	57	94	0	195	37	15	11	35	1.84
412224--412248	2	12.5	2	100	0	50	52	0	0	48	1.00
412281--412377	31	3.1	31	80	12	101	59	0	2	38	1.09
412298--412442	20	7.2	20	65	23	56	59	0	1	39	1.06
412286--412443	61	2.6	61	74	19	161	60	0	1	38	1.05
412332--412381	18	2.9	18	77	11	52	54	0	0	46	1.00
412287--412382	32	3.1	31	82	11	117	59	0	1	39	1.04
412826--412897	29	2.6	26	79	12	72	55	5	0	38	1.23
412930--413005	32	2.4	31	78	8	82	31	1	0	67	0.99
414307--414362	29	2.0	28	89	3	85	37	3	1	57	1.27
414784--414882	44	2.2	44	81	0	126	47	8	10	34	1.67
416981--417091	57	1.9	57	94	0	195	37	15	11	35	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
417366--417390	2	12.5	2	100	0	50	52	0	0	48	1.00
417423--417519	31	3.1	31	80	12	101	59	0	2	38	1.09
417440--417584	20	7.2	20	65	23	56	59	0	1	39	1.06
417428--417585	61	2.6	61	74	19	161	60	0	1	38	1.05
417474--417523	18	2.9	18	77	11	52	54	0	0	46	1.00
417429--417524	32	3.1	31	82	11	117	59	0	1	39	1.04
417945--417992	20	2.3	20	89	3	69	54	2	2	41	1.24
419282--419354	6	12.8	6	74	18	59	38	0	1	60	1.06
419300--419345	16	3.0	16	75	21	53	41	0	0	58	0.98
419282--419354	11	6.4	12	71	21	59	38	0	1	60	1.06
421756--421926	38	4.5	38	90	1	236	27	29	14	28	1.95
423034--423076	2	22.0	2	90	4	70	46	0	0	53	1.00
423985--424035	2	25.5	2	91	0	84	50	1	47	0	1.12
428141--428187	20	2.5	20	86	6	62	27	2	8	61	1.36
428062--428267	69	2.9	71	79	8	247	34	1	8	54	1.41
428064--428281	71	3.1	71	78	10	241	34	1	7	55	1.39
428400--428470	25	2.6	26	80	15	72	39	0	1	59	1.06
428833--429035	73	2.8	73	76	10	191	36	0	6	55	1.33
428856--428995	73	1.9	72	85	4	192	37	1	5	55	1.33
435918--435954	19	1.9	19	88	0	56	29	2	2	64	1.21
435927--435980	12	4.6	12	71	19	51	37	0	0	62	0.95
436340--436387	17	2.8	17	71	9	53	43	0	0	56	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
437185--437218	17	2.1	15	89	10	50	52	0	0	47	1.00
437968--438004	19	2.0	18	89	5	56	32	0	0	67	0.91
438088--438127	20	2.0	20	85	0	53	35	2	0	62	1.09
440898--441000	50	2.1	50	98	0	197	32	21	10	35	1.88
442744--442810	23	2.8	23	82	8	64	58	0	0	41	0.98
443195--443236	19	2.4	19	84	11	54	64	2	2	30	1.19
443345--443460	38	3.3	35	76	18	100	56	1	0	40	1.15
444016--444071	8	6.6	8	78	10	58	16	0	3	80	0.85
444016--444070	17	3.3	16	78	14	58	16	0	3	80	0.86
444110--444134	7	3.6	7	100	0	50	88	0	12	0	0.53
444523--444560	19	2.0	19	85	10	51	57	0	2	39	1.12
444824--444857	16	2.1	17	94	5	61	35	0	0	64	0.94
445617--445660	22	2.0	22	86	8	63	65	0	0	34	0.93
445617--445658	12	3.7	12	81	9	52	66	0	0	33	0.92
445634--445702	17	3.8	17	73	17	59	60	1	1	36	1.14
445948--446011	10	6.5	10	72	16	53	35	1	0	62	1.05
445947--446075	9	15.0	8	69	23	52	41	1	0	56	1.14
445947--446018	21	3.4	22	75	17	64	37	1	0	61	1.05
445948--446112	30	5.8	28	68	19	92	38	1	1	58	1.16
445966--446032	26	2.5	26	83	11	73	40	1	1	56	1.17
445947--446038	49	1.9	48	82	10	118	40	1	1	57	1.13
445947--446054	47	2.3	49	81	12	120	39	0	0	58	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
446097--446137	21	1.9	21	95	5	73	34	0	4	60	1.18
446652--446721	2	35.0	2	79	11	63	48	2	4	44	1.37
446778--447023	123	2.0	123	99	0	483	42	13	10	33	1.79
447020--447047	3	9.3	3	100	0	56	0	32	0	67	0.91
447167--447205	3	13.0	3	100	0	78	33	0	0	66	0.92
448046--448081	17	2.1	17	100	0	72	50	5	44	0	1.25
448139--448309	9	17.9	9	68	22	50	36	1	1	60	1.15
448193--448264	32	2.2	33	85	2	101	41	1	0	56	1.07
448249--448324	11	6.7	11	70	16	57	32	2	0	64	1.07
448138--448324	19	10.3	18	66	17	84	37	2	1	59	1.17
448246--448309	24	2.6	25	79	18	71	31	1	0	67	1.00
448767--448816	25	2.0	25	85	14	68	34	4	0	62	1.14
450898--450924	2	13.5	2	100	0	54	48	0	0	51	1.00
458551--458625	26	3.4	22	73	25	68	62	0	0	37	0.95
459127--459169	5	8.6	5	80	10	52	37	0	0	62	0.95
459127--459205	30	2.8	28	81	7	97	40	0	0	59	0.97
459154--459245	20	4.6	21	68	21	72	46	0	0	53	1.00
459163--459210	18	2.8	17	84	12	62	45	0	0	54	0.99
459176--459236	16	3.8	16	75	16	54	47	0	0	52	1.00
459168--459254	32	2.9	31	71	19	76	45	1	1	51	1.16
461494--461533	21	1.9	21	90	10	64	40	0	0	60	0.97
461854--461942	39	2.3	38	78	14	94	56	3	0	40	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
462629--462687	21	2.9	21	85	5	68	50	0	11	37	1.39
462780--462826	20	2.5	19	82	6	60	61	0	2	36	1.08
462786--462833	19	2.5	19	83	6	53	64	0	2	33	1.05
462810--462843	11	3.0	11	91	4	50	70	0	2	26	1.01
463142--463174	13	2.6	13	90	4	50	18	45	9	27	1.79
465634--465679	21	2.1	22	84	4	58	30	19	30	19	1.97
467380--467474	26	3.7	25	78	12	95	23	8	21	47	1.77
467386--467456	26	2.7	26	88	2	97	21	7	23	47	1.75
469064--469136	29	2.5	30	76	12	82	34	2	4	58	1.31
473243--473270	2	14.0	2	100	0	56	50	0	0	50	1.00

Tables:   1   2   3   4   5   6