genome.fa.s425.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold425
Parameters: 2 7 7 80 10 50 1000
Length:  711097

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 531 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
361139--361289	16	9.6	16	69	9	96	37	0	5	56	1.27
361138--361246	33	3.5	31	70	17	82	35	0	4	58	1.25
361164--361284	47	2.6	44	76	13	109	38	0	4	57	1.24
362043--362085	21	2.0	22	90	9	70	30	2	9	58	1.42
363027--363098	16	4.4	16	75	10	65	26	2	2	68	1.17
363027--363112	31	2.7	32	82	7	86	29	4	2	63	1.26
363027--363098	32	2.2	33	82	7	85	26	2	2	68	1.17
363987--364047	25	2.6	23	76	18	63	47	0	0	52	1.00
364030--364088	27	2.3	27	85	11	79	42	0	3	54	1.17
367270--367324	28	1.9	29	88	3	85	65	0	1	32	1.03
367351--367410	31	1.9	31	83	12	79	51	1	0	46	1.10
368295--368358	10	6.7	10	75	22	57	67	3	1	28	1.15
368293--368332	11	3.7	11	86	6	55	65	0	2	32	1.06
368264--368398	18	7.1	19	67	19	59	58	1	0	39	1.12
368256--368402	47	3.1	45	74	15	136	59	2	0	37	1.14
368688--368741	27	1.9	29	85	7	76	57	1	0	40	1.09
368775--368809	12	3.2	11	88	12	54	54	0	0	45	0.99
369705--369773	16	4.4	16	81	5	79	31	0	5	62	1.19
370566--370604	20	1.9	21	89	5	62	51	0	0	48	1.00
371089--371186	51	1.9	51	85	4	135	36	13	3	46	1.58
372764--372788	2	12.5	2	100	0	50	52	0	0	48	1.00
374035--374075	2	20.5	2	100	0	82	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
375764--375834	35	2.0	36	94	2	126	50	12	9	26	1.71
377026--377078	18	2.9	19	83	5	74	39	0	0	60	0.97
377034--377085	27	2.0	26	85	11	70	44	0	0	55	0.99
378239--378272	4	8.8	4	87	6	52	0	20	0	79	0.73
378911--379114	69	3.0	69	92	0	327	45	4	14	35	1.65
386107--386171	31	2.1	31	97	0	121	49	20	1	29	1.58
388329--388416	25	3.5	25	75	16	92	60	0	2	37	1.10
388347--388403	23	2.4	23	85	8	71	63	0	3	33	1.12
388341--388416	24	3.2	24	78	16	86	63	0	2	34	1.09
388713--388753	21	2.0	21	90	4	66	51	0	2	46	1.14
389289--389372	43	1.9	44	97	2	161	30	19	17	32	1.95
395811--395844	2	17.0	2	100	0	68	50	0	50	0	1.00
396330--396363	3	11.3	3	100	0	68	67	0	0	32	0.91
403158--403726	281	2.0	279	95	1	1032	25	19	17	36	1.94
404193--404316	52	2.4	53	90	1	196	24	15	16	44	1.85
405486--405539	22	2.4	21	84	9	63	64	0	1	33	1.04
405499--405552	16	3.2	17	80	15	58	66	0	1	31	1.02
405698--405729	17	1.9	17	93	6	57	3	18	0	78	0.89
405715--405766	17	3.0	17	77	2	59	0	32	0	67	0.91
405863--405904	2	21.5	2	95	4	77	50	0	0	50	1.00
406128--406173	24	1.9	24	91	8	76	39	0	0	60	0.97
406126--406172	13	3.8	13	78	16	55	40	0	0	59	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
407671--407717	19	2.5	19	86	6	60	38	0	4	57	1.18
410618--410675	21	2.6	22	86	10	75	56	0	0	43	0.99
410632--410703	35	2.1	35	84	10	94	55	0	0	44	0.99
412004--412032	11	2.7	11	94	5	51	79	0	13	6	0.93
412171--412216	22	2.1	22	84	11	60	30	23	0	45	1.53
412607--412644	2	19.0	2	100	0	76	50	0	0	50	1.00
413865--413889	5	5.0	5	100	0	50	40	0	0	60	0.97
414019--414049	14	2.2	14	94	0	53	35	25	3	35	1.72
414710--414773	21	3.0	21	73	8	58	57	7	4	29	1.47
415009--415076	14	5.2	13	80	19	79	61	0	0	38	0.96
415011--415103	19	4.6	21	67	27	67	60	0	0	39	0.97
415018--415148	5	27.4	5	67	21	59	59	0	0	39	1.03
415009--415150	16	8.7	16	69	17	96	59	0	0	40	1.03
415019--415104	8	10.5	8	71	22	63	59	0	0	40	0.97
415011--415132	27	4.6	27	74	12	92	57	0	0	41	1.04
415008--415148	27	5.6	25	68	17	87	59	0	0	39	1.02
416275--416318	2	22.0	2	100	0	88	50	0	0	50	1.00
417000--417048	23	2.1	23	88	7	73	51	0	2	46	1.12
417012--417053	22	2.0	20	86	9	57	50	0	0	50	1.00
417607--417665	18	3.2	19	73	17	54	59	0	1	38	1.08
417944--418027	12	7.4	11	78	12	62	55	0	4	39	1.21
417934--418012	12	6.9	11	80	12	79	58	1	3	36	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
417944--418012	6	12.2	6	70	21	51	59	0	4	36	1.17
417981--418012	10	3.1	10	95	4	55	68	0	0	31	0.90
418679--418750	20	3.6	20	94	5	128	66	0	0	33	0.92
422508--422565	18	3.3	18	73	4	64	10	22	5	62	1.47
422494--422565	35	2.0	36	89	8	110	8	22	5	63	1.43
430648--430693	24	2.0	23	86	4	65	21	10	23	43	1.84
430678--430749	32	2.2	32	82	0	81	25	11	16	47	1.79
430678--430748	16	4.4	16	70	10	56	25	9	16	47	1.77
431804--431869	28	2.5	25	82	9	69	68	1	0	30	0.99
431828--431868	12	3.1	14	76	16	52	68	0	0	31	0.90
439699--439744	23	2.0	23	87	8	67	39	2	0	58	1.10
440894--440956	13	4.5	13	72	14	54	33	0	1	65	1.03
440881--441032	27	5.3	27	72	20	105	40	0	1	58	1.06
440929--440984	16	3.4	16	73	20	53	41	0	0	58	0.98
440942--441022	19	4.7	19	71	22	63	43	0	0	56	0.99
440893--441016	7	16.0	8	68	21	61	40	0	0	58	1.03
440939--441021	32	2.5	33	88	7	125	44	0	0	55	0.99
442861--442902	18	2.4	18	80	4	50	66	0	0	33	0.92
442991--443051	21	2.8	21	76	14	61	60	3	1	34	1.23
442993--443051	20	2.6	22	77	20	61	59	3	1	35	1.24
444794--444862	22	3.0	23	82	6	77	56	0	1	42	1.08
445018--445086	27	2.5	27	86	6	86	24	7	21	46	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
449591--449661	28	2.6	28	90	2	108	22	5	23	47	1.72
450403--450432	2	15.0	2	100	0	60	50	0	0	50	1.00
450811--450918	46	2.2	46	82	11	119	55	0	0	43	1.06
450772--450919	10	14.2	11	66	25	74	58	1	0	40	1.07
450773--450923	19	7.4	19	72	20	92	58	1	0	40	1.06
453283--453316	17	1.9	18	88	5	52	58	0	0	41	0.98
453294--453344	22	2.3	23	81	15	63	62	0	0	37	0.95
453324--453371	18	2.6	18	80	12	53	58	2	0	39	1.10
453846--453901	20	2.7	21	75	16	62	50	5	0	44	1.25
453892--453933	21	2.0	20	86	13	59	59	4	2	33	1.31
454955--455025	23	3.0	23	77	4	70	52	0	0	47	1.00
454956--455004	16	3.1	16	77	16	57	51	0	0	48	1.00
454960--455024	24	2.8	23	79	4	67	53	0	0	46	1.00
454956--455019	31	2.1	32	82	11	80	54	0	0	45	0.99
455340--455400	27	2.3	27	85	0	77	50	1	1	45	1.21
455505--455551	21	2.2	21	85	7	60	51	0	4	44	1.21
455691--455726	17	2.1	17	94	0	63	52	0	0	47	1.00
458654--458816	23	6.9	23	65	22	70	39	1	0	58	1.09
458744--458796	12	4.4	12	83	7	72	32	1	0	66	1.03
458744--458815	8	9.0	8	72	17	60	34	1	0	63	1.03
458936--458961	2	13.0	2	100	0	52	50	0	0	50	1.00
464104--464197	34	3.1	30	73	21	88	43	0	1	55	1.06
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
465054--465135	32	2.4	36	80	17	102	47	1	0	51	1.08
466799--466830	2	16.0	2	100	0	64	50	0	0	50	1.00
467826--467860	16	2.1	17	89	5	54	54	0	2	42	1.15
467855--467953	32	3.1	31	75	4	92	43	4	6	46	1.47
472610--472639	3	10.0	3	100	0	60	33	0	0	66	0.92
484304--484363	13	4.8	12	74	17	52	35	0	1	63	1.05
485447--485507	14	4.1	15	71	10	54	55	0	0	44	0.99
486435--486483	2	24.5	2	100	0	98	0	48	0	51	1.00
486944--486978	2	17.5	2	100	0	70	51	0	48	0	1.00
490286--490384	49	2.0	49	96	0	180	45	16	8	30	1.76

Tables:   1   2   3   4   5