Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold425
Parameters: 2 7 7 80 10 50 1000
Length:  711097

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 531 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
654078--654123
20
2.2
21
88
3
67
67
0
6
26
1.15
654088--654147
20
3.1
19
83
7
59
58
1
5
35
1.30
654400--654436
2
19.5
2
89
10
60
48
0
0
51
1.00
654594--654642
22
2.3
23
82
13
68
51
2
2
44
1.24
654594--654668
22
3.5
21
73
19
66
52
1
1
45
1.17
654617--654669
25
2.1
25
82
6
63
52
1
0
45
1.11
656143--656173
2
15.5
2
93
0
53
54
0
45
0
0.99
657645--657670
4
6.5
4
100
0
52
23
0
0
76
0.78
659113--659138
3
8.7
3
100
0
52
65
0
0
34
0.93
659178--659470
146
2.0
149
91
3
477
50
4
6
37
1.50
659851--659909
23
2.8
21
80
12
66
44
0
0
55
0.99
659851--659888
18
2.0
20
90
10
62
47
0
0
52
1.00
659851--659909
20
2.9
19
78
9
55
44
0
0
55
0.99
659846--659970
22
5.6
22
71
21
55
47
0
0
52
1.06
661135--661185
21
2.4
22
76
6
59
35
5
5
52
1.50
661393--661418
13
2.0
13
100
0
52
46
0
0
53
1.00
663072--663177
29
3.4
31
72
12
83
42
0
0
56
1.05
663112--663168
24
2.4
23
85
8
71
36
0
0
63
0.95
663061--663177
62
1.9
60
84
6
155
41
0
0
57
1.05
663735--663765
2
15.5
2
100
0
62
48
0
0
51
1.00
663910--663990
18
4.7
18
69
25
57
55
0
0
44
0.99
663910--663963
18
2.9
18
86
8
65
55
0
0
44
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
664155--664203
18
2.8
18
80
20
68
75
0
0
24
0.80
666846--666883
3
12.7
3
94
0
67
63
0
2
34
1.09
667106--667135
2
15.0
2
92
0
51
46
0
3
50
1.18
674739--674776
2
19.5
2
83
5
51
42
5
0
52
1.24
674738--674776
15
2.7
15
84
4
53
41
5
0
53
1.23
675029--675065
2
18.5
2
94
0
65
48
2
0
48
1.15
675637--675686
3
17.0
3
95
4
93
32
0
0
68
0.90
677295--677326
1
32.0
1
100
0
64
0
0
0
100
0.00
677930--677960
8
3.9
8
95
0
53
41
0
0
58
0.98
678457--678496
20
2.0
21
85
5
55
42
2
10
45
1.51
680315--680379
2
32.5
2
100
0
130
49
0
0
50
1.00
681951--681993
17
2.5
17
78
10
52
39
0
4
55
1.20
685003--685034
3
10.7
3
100
0
64
34
0
0
65
0.93
685874--685906
2
16.5
2
93
0
57
45
0
0
54
0.99
687652--687737
20
4.0
20
69
25
59
47
0
0
52
1.00
687620--687722
45
2.2
48
81
10
124
47
0
0
51
1.07
689370--689411
3
14.0
3
100
0
84
66
0
0
33
0.92
689719--689795
7
11.6
7
71
9
54
33
1
18
46
1.57
689718--689795
13
5.8
13
73
13
61
34
1
17
46
1.57
691350--691385
2
18.0
2
100
0
72
50
0
0
50
1.00
691553--691592
3
13.3
3
94
0
62
30
0
5
65
1.14
700609--700651
19
2.1
21
83
8
54
58
2
0
39
1.11
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
700629--700674
11
4.2
11
82
0
56
63
2
0
34
1.07
703250--703348
51
1.9
51
89
0
153
26
14
11
48
1.76
703311--703368
20
2.9
20
89
5
91
31
13
10
44
1.78
703261--703416
71
2.2
71
89
2
233
28
14
10
45
1.79
704269--704598
164
2.0
164
98
0
633
29
23
9
38
1.86
706835--706873
2
19.5
2
100
0
78
48
0
0
51
1.00
711014--711063
23
2.2
22
85
3
64
30
0
4
66
1.10

Tables:   1   2   3   4   5

The End!