genome.fa.s433.2.7.7.80.10.50.1000.2.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold433
Parameters: 2 7 7 80 10 50 1000
Length:  558157

Tables:   1   2   3   4   5   

This is table  2  of  5  ( 567 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121616--121670	29	1.9	29	85	10	78	52	1	0	45	1.11
124916--125005	43	2.1	43	89	0	135	37	5	18	37	1.75
125066--125098	11	3.1	11	86	4	50	45	0	3	51	1.16
126496--126526	2	15.5	2	93	0	53	51	3	0	45	1.17
126552--126583	15	2.0	17	88	11	50	37	0	0	62	0.95
132555--132600	18	2.6	17	82	6	56	45	0	0	54	0.99
133701--133725	11	2.3	11	100	0	50	24	0	0	76	0.80
134228--134280	20	2.5	20	79	11	54	75	0	0	24	0.80
134567--134638	27	2.5	29	80	17	80	61	0	1	37	1.05
134550--134641	9	10.4	9	73	15	61	63	0	1	35	1.02
134550--134643	49	2.0	45	83	8	116	62	0	1	36	1.02
155835--155875	6	6.8	6	79	20	50	51	0	0	48	1.00
155896--155938	18	2.4	19	84	7	54	41	0	0	58	0.98
155977--156006	5	5.8	5	92	7	51	40	0	0	60	0.97
156302--156458	5	31.8	5	69	19	64	36	1	0	62	1.04
156301--156375	32	2.3	33	81	6	89	41	0	0	58	0.98
156416--156458	13	3.6	11	79	14	50	34	0	0	65	0.93
156406--156448	13	3.1	13	84	15	59	27	0	0	72	0.85
157767--157808	12	3.8	11	82	17	52	50	0	0	50	1.00
157895--157949	28	2.0	28	85	7	76	60	0	0	40	0.97
158290--158327	19	2.0	19	90	10	60	60	0	0	39	0.97
159413--159445	17	2.0	17	88	5	50	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
159941--160004	21	3.0	21	76	14	69	51	1	1	45	1.20
159904--160646	345	2.2	335	84	5	935	42	5	8	44	1.57
171893--171922	15	2.0	15	100	0	60	6	13	20	60	1.55
172946--172987	3	14.0	3	85	9	59	30	0	4	64	1.14
174064--174137	25	2.9	26	84	9	91	40	1	0	58	1.07
174092--174129	20	1.9	20	89	10	60	34	2	0	63	1.09
174522--174556	17	2.1	17	94	0	61	51	0	2	45	1.16
174617--174649	13	2.5	13	95	0	57	57	0	3	39	1.14
180035--180079	22	2.1	21	84	12	56	62	0	0	37	0.96
180326--180354	3	9.7	3	100	0	58	31	0	0	68	0.89
180670--180710	21	2.0	21	85	9	57	39	0	0	60	0.96
180844--180880	14	2.6	15	83	12	51	70	0	0	29	0.88
181557--181601	22	2.1	22	84	12	58	44	0	0	55	0.99
182160--182209	26	1.9	26	87	0	73	50	0	0	50	1.00
182140--182233	44	2.2	43	83	10	115	50	2	0	47	1.13
183007--183059	25	2.1	25	86	6	72	56	5	9	28	1.54
185026--185144	13	9.8	13	75	16	73	58	0	0	40	1.04
185026--185128	5	20.6	5	71	16	72	61	0	0	37	1.03
185036--185129	13	6.8	15	74	20	80	62	0	1	36	1.02
185086--185187	32	3.3	32	71	16	90	55	0	0	44	0.99
185032--185173	44	3.4	43	76	13	120	59	0	0	40	1.03
185117--185162	18	2.6	18	76	16	51	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
185308--185353	26	1.9	23	83	16	58	47	0	0	52	1.00
185339--185436	10	9.8	10	76	9	76	55	1	0	43	1.06
185356--185431	19	3.8	19	76	8	71	53	0	0	46	1.00
188453--188490	18	2.1	18	100	0	76	39	10	5	44	1.61
189623--189666	3	14.7	3	100	0	88	34	0	0	65	0.93
190462--190506	2	22.5	2	95	0	81	48	0	2	48	1.13
190779--190821	21	2.0	21	82	13	52	55	0	2	41	1.12
193223--193254	16	2.0	16	93	0	55	18	21	18	40	1.91
197576--197811	15	16.2	15	67	21	78	54	2	0	42	1.18
197570--197714	53	2.8	52	81	9	136	53	2	1	42	1.24
197577--197721	37	3.9	35	78	10	114	51	2	1	44	1.24
197670--197810	10	14.7	10	69	22	56	58	1	0	40	1.07
197603--197742	53	2.7	51	81	8	147	52	2	0	45	1.15
197727--197797	9	8.2	9	72	20	62	60	0	0	39	0.97
197743--197810	27	2.5	27	78	7	75	60	0	0	39	0.97
197727--197793	17	3.9	18	79	12	63	61	0	0	38	0.96
199303--199336	17	2.0	17	88	11	52	61	0	0	38	0.96
204176--204220	18	2.5	18	85	0	54	66	2	0	31	1.04
204258--204300	18	2.5	17	81	7	50	60	2	0	37	1.10
205300--205349	21	2.3	21	79	6	55	36	2	20	42	1.63
207324--207352	2	14.5	2	100	0	58	51	0	0	48	1.00
208905--208949	10	4.7	9	81	13	54	80	0	2	17	0.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
208917--208955	9	4.2	9	83	6	51	76	0	2	20	0.90
218312--218346	17	2.1	16	89	5	52	0	8	2	88	0.61
219870--219898	13	2.1	14	93	6	51	44	6	0	48	1.29
220607--220652	23	2.0	23	95	0	83	17	23	17	41	1.90
225142--225218	38	2.0	40	82	12	99	42	1	3	51	1.28
225680--225730	26	2.0	26	88	3	77	33	0	0	66	0.92
227688--227752	34	1.9	34	90	0	103	44	20	12	23	1.84
230039--230071	2	16.5	2	100	0	66	51	0	48	0	1.00
234109--234158	13	3.8	13	76	15	50	24	0	2	74	0.93
237507--237541	16	2.1	16	89	10	52	60	0	0	40	0.97
237508--237578	29	2.3	31	79	15	85	59	1	0	39	1.06
239038--239080	18	2.4	18	82	17	54	55	4	0	39	1.20
239068--239100	11	3.0	11	87	12	50	63	0	0	36	0.95
239046--239114	30	2.4	28	81	15	72	63	1	0	34	1.03
243118--243206	38	2.5	34	75	15	92	52	2	4	40	1.34
243269--243311	21	2.0	21	86	8	61	67	0	0	32	0.91
243328--243477	46	3.2	45	83	12	160	55	0	0	44	1.04
243374--243450	16	5.1	16	69	20	58	54	1	0	44	1.08
243334--243461	50	2.6	47	85	10	159	55	0	0	43	1.05
243341--243477	50	2.7	50	82	11	131	54	0	0	44	1.05
243719--243790	16	4.6	16	72	14	62	54	2	0	43	1.15
243725--243808	26	2.9	28	79	15	100	54	2	1	41	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
243813--243853	11	3.8	12	78	21	54	36	0	0	63	0.95
243932--243964	14	2.3	15	89	5	50	54	3	0	42	1.15
243945--243996	26	2.0	26	84	0	68	38	3	0	57	1.17
244332--244418	42	2.1	42	82	8	106	37	1	3	57	1.23
246223--246257	16	2.1	17	89	5	54	31	0	0	68	0.90
246218--246261	22	2.0	22	86	0	61	34	0	0	65	0.93
246419--246485	20	3.5	19	84	8	73	56	1	1	40	1.17
246912--246946	2	17.5	2	100	0	70	48	0	0	51	1.00
247149--247205	16	3.8	15	78	15	64	47	1	0	50	1.11
247507--247573	29	2.3	29	87	5	91	61	1	0	37	1.05
247506--247564	16	3.9	15	75	20	52	55	1	0	42	1.09
247605--247651	21	2.2	22	85	11	62	19	6	0	74	1.03
257346--257387	2	21.0	2	100	0	84	0	50	0	50	1.00
258158--258209	25	2.1	25	92	0	86	25	17	13	44	1.85
259424--259483	19	3.2	20	83	11	72	53	0	0	46	1.00
259517--259555	20	1.9	21	84	5	53	56	0	0	43	0.99
260817--260860	2	22.0	2	100	0	88	50	0	0	50	1.00
261394--261452	3	19.7	3	100	0	118	66	0	0	33	0.92
261299--261589	161	1.8	161	96	0	537	50	13	4	31	1.62
261556--261589	3	11.3	3	100	0	68	67	0	0	32	0.91
263422--263465	19	2.4	19	92	3	72	40	2	11	45	1.53
264203--264245	21	2.0	21	81	0	50	20	16	2	60	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
265080--265162	38	2.2	37	89	8	123	50	3	4	40	1.41
268113--268153	2	20.5	2	100	0	82	51	0	0	48	1.00
268472--268531	3	20.0	3	100	0	120	66	0	0	33	0.92
271371--271440	32	2.2	32	84	5	88	44	1	1	52	1.18
271661--271713	14	3.6	14	78	14	54	35	1	0	62	1.06
272214--272258	18	2.5	18	85	10	65	55	0	0	44	0.99
272214--272257	9	4.9	9	80	8	54	54	0	0	45	0.99
272214--272257	17	2.4	18	88	7	63	54	0	0	45	0.99
273023--273057	16	2.2	16	89	0	52	34	0	0	65	0.93
273348--273454	43	2.5	44	79	10	105	38	2	0	57	1.19

Tables:   1   2   3   4   5