Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold433
Parameters: 2 7 7 80 10 50 1000
Length:  558157

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 567 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
489263--489338
11
7.2
11
80
14
72
46
2
0
51
1.15
489275--489338
5
12.4
5
80
18
69
43
1
0
54
1.09
489744--489781
19
2.0
20
89
5
60
55
0
0
44
0.99
490462--490510
21
2.2
21
85
10
62
38
2
4
55
1.31
492129--492179
16
3.0
17
83
13
61
39
0
0
60
0.97
492124--492152
13
2.1
14
93
6
51
34
0
0
65
0.93
492140--492189
19
2.6
19
84
9
57
44
0
0
56
0.99
492138--492191
22
2.7
19
83
16
65
42
0
0
57
0.98
493232--493256
2
12.5
2
100
0
50
52
0
0
48
1.00
493303--493327
2
12.5
2
100
0
50
52
0
0
48
1.00
497713--497770
26
2.1
28
84
15
77
58
0
0
41
0.98
497713--497785
7
10.3
7
81
12
71
54
1
0
43
1.08
497713--497785
22
3.4
22
81
12
82
54
1
0
43
1.08
497713--497785
29
2.6
29
83
12
82
54
1
0
43
1.08
498478--498545
22
2.9
23
85
10
77
45
2
0
51
1.16
499354--499395
17
2.5
17
76
7
50
47
0
0
52
1.00
499541--499588
16
3.0
16
81
0
60
58
0
0
41
0.98
499955--499997
15
2.8
16
86
10
63
55
0
0
44
0.99
501358--501401
22
2.0
20
87
12
61
63
0
0
36
0.95
501354--501410
23
2.5
23
83
8
73
56
0
0
43
0.99
502262--502304
18
2.3
18
84
4
59
37
0
0
62
0.95
504349--504380
2
16.0
2
100
0
64
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
505249--505362
58
2.0
58
91
3
185
35
14
15
34
1.89
505816--505849
12
2.8
12
86
0
50
5
20
2
70
1.21
509218--509298
14
4.5
18
66
26
55
62
2
6
28
1.32
509199--509279
31
2.7
30
79
9
85
59
3
4
32
1.36
509326--509364
15
2.6
15
83
0
51
61
0
5
33
1.18
510237--510420
41
4.5
41
87
5
212
39
6
5
47
1.54
510281--510345
20
3.2
21
66
16
64
43
4
3
49
1.39
510237--510420
81
2.3
82
84
4
230
39
6
5
47
1.54
513256--513307
25
2.0
25
81
7
59
23
3
11
61
1.46
513558--513606
26
1.9
26
83
4
64
42
2
8
46
1.45
515370--515411
19
2.1
21
86
8
61
42
0
0
57
0.99
515895--515954
20
3.1
20
80
4
70
48
0
0
51
1.00
516109--516170
20
3.1
22
76
17
64
54
0
0
45
0.99
517529--517577
7
6.7
7
77
9
53
46
2
0
51
1.12
518033--518065
2
16.5
2
93
0
57
48
0
3
48
1.17
518691--518756
31
2.1
31
83
13
82
46
0
0
53
1.00
520983--521033
15
3.3
15
81
5
57
21
1
13
62
1.40
520999--521034
16
2.2
16
95
0
63
25
0
8
66
1.19
521916--521952
17
2.2
17
90
0
56
21
5
35
37
1.77
524626--524665
2
20.0
2
100
0
80
0
0
50
50
1.00
525369--525521
12
13.1
12
64
15
61
48
0
0
51
1.00
525369--525518
6
24.7
6
66
20
53
49
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
525385--525460
19
3.9
19
75
14
57
53
0
0
46
1.00
525393--525490
43
2.3
42
76
5
97
55
0
0
44
0.99
528202--528244
21
2.0
21
100
0
86
51
0
0
48
1.00
528209--528255
21
2.3
21
85
7
62
57
0
2
40
1.11
528330--528362
11
2.8
12
86
9
50
69
0
0
30
0.88
528330--528365
12
3.1
12
88
8
56
66
0
0
33
0.92
528681--528721
13
3.2
13
80
12
50
53
0
0
46
1.00
528672--528756
24
3.4
25
74
6
66
54
0
0
45
1.00
528761--528808
24
2.0
24
100
0
96
41
12
8
37
1.73
529076--529129
21
2.5
22
85
11
76
24
0
5
70
1.08
537686--537724
17
2.4
16
86
4
51
43
0
0
56
0.99
537680--537730
26
2.0
27
84
7
70
43
0
0
56
0.99
537675--537724
16
3.1
16
77
11
57
44
0
0
56
0.99
539530--539559
12
2.4
12
94
5
51
63
0
0
36
0.95
539893--539945
22
2.5
22
81
3
63
64
0
0
35
0.94
540271--540346
32
2.3
33
81
4
100
44
3
3
47
1.40
541031--541074
22
2.0
21
83
16
54
47
0
0
52
1.00
541355--541433
37
2.2
36
81
6
88
50
0
0
49
1.00
542026--542071
21
2.2
21
84
0
56
41
0
0
58
0.98
544126--544215
42
2.2
42
86
6
121
23
3
4
68
1.22
544227--544257
15
2.1
15
100
0
62
74
0
0
25
0.82
544480--544518
19
2.2
19
86
9
55
58
0
2
38
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
544485--544527
18
2.3
18
84
11
52
60
0
2
37
1.10
544475--544560
14
6.3
13
67
18
50
61
1
1
36
1.11
545165--545189
2
12.5
2
100
0
50
52
48
0
0
1.00
545191--545218
2
14.0
2
100
0
56
50
0
0
50
1.00
547345--547416
29
2.5
29
88
2
110
59
2
0
37
1.12
549966--550003
17
2.2
18
85
4
51
36
0
2
60
1.11
550024--550071
16
3.1
16
74
20
57
45
0
0
54
0.99
550413--550517
23
4.6
23
70
12
81
49
3
0
45
1.26
550401--550508
34
3.2
34
69
23
91
48
4
0
46
1.29
551181--551252
10
6.9
10
76
16
58
40
0
0
59
0.97
551189--551245
16
3.6
15
76
9
51
42
0
0
57
0.98
551291--551335
17
2.6
17
86
10
56
26
8
0
64
1.23
552128--552180
9
5.4
10
80
14
58
47
0
0
52
1.00
552128--552186
9
6.2
9
76
16
57
47
0
0
52
1.00
552388--552425
2
19.0
2
100
0
76
50
0
0
50
1.00
554624--554684
6
9.3
6
74
22
52
39
1
0
59
1.08
554621--554718
34
2.9
34
80
15
98
44
1
1
53
1.14
554617--554716
18
6.1
18
64
25
53
44
1
1
54
1.13
554617--554755
14
10.5
14
67
27
65
41
1
0
56
1.13
555799--555841
3
14.3
3
100
0
86
67
0
0
32
0.91
557035--557089
29
1.9
29
88
3
85
21
7
18
52
1.69

Tables:   1   2   3   4   5

The End!