genome.fa.s433.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold433
Parameters: 2 7 7 80 10 50 1000
Length:  558157

Tables:   1   2   3   4   5   

This is table  3  of  5  ( 567 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
273380--273466	35	2.5	34	73	12	88	43	0	1	55	1.07
274316--274379	29	2.3	27	78	5	74	50	0	0	50	1.00
274741--274782	21	2.0	22	86	9	61	50	2	0	47	1.14
275321--275364	16	2.8	16	89	3	63	59	0	2	38	1.10
277082--277151	32	2.2	32	89	5	106	54	0	0	45	0.99
277062--277156	18	5.5	18	70	22	53	54	0	0	45	0.99
277460--277520	17	3.6	17	76	12	63	39	0	0	60	0.97
277462--277516	28	2.0	28	85	7	76	41	0	0	58	0.98
279085--279120	2	18.0	2	100	0	72	50	0	0	50	1.00
279768--279815	16	3.2	15	82	8	53	37	0	2	60	1.09
280982--281020	2	19.5	2	100	0	78	51	0	0	48	1.00
281983--282037	11	5.5	11	83	16	75	67	0	0	32	0.91
281984--282040	28	2.0	29	93	3	98	70	0	0	29	0.88
281986--282053	28	2.5	26	80	15	84	69	0	0	30	0.89
281986--282051	11	6.0	11	77	10	64	69	0	0	30	0.88
282430--282474	22	2.0	22	86	0	63	62	0	2	35	1.08
285873--286076	102	2.0	102	93	0	345	27	21	19	32	1.97
290955--290988	5	6.8	5	93	0	59	38	0	2	58	1.13
292207--292270	26	2.6	24	85	7	83	43	1	0	54	1.09
292292--292336	24	1.9	23	86	4	63	51	0	2	46	1.13
292293--292367	30	2.5	31	74	12	75	46	0	1	52	1.09
292321--292396	22	3.3	25	72	17	67	44	0	0	55	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
292408--292481	35	2.0	37	84	7	98	47	0	2	50	1.15
292404--292500	35	2.8	35	72	12	83	46	0	2	51	1.12
293261--293331	31	2.2	31	82	5	79	42	0	2	54	1.14
294245--294302	30	2.0	29	86	3	80	34	3	0	62	1.12
296243--296282	20	2.0	21	90	5	64	40	0	0	60	0.97
296243--296296	21	2.6	21	85	8	67	42	0	0	57	0.98
296247--296309	21	3.0	20	82	11	65	46	0	0	53	1.00
296240--296331	27	3.5	26	81	10	98	44	0	0	55	0.99
296293--296342	21	2.4	21	76	3	57	52	0	0	48	1.00
296273--296342	26	2.4	29	81	13	83	51	0	0	48	1.00
297259--297304	24	1.9	24	82	8	58	54	0	0	45	0.99
297386--297441	23	2.5	22	80	8	58	55	0	0	44	0.99
297953--298008	18	2.8	19	75	21	53	55	0	0	44	0.99
299075--299107	2	17.0	2	93	6	59	51	0	0	48	1.00
299246--299273	2	14.0	2	100	0	56	50	0	0	50	1.00
301127--301185	24	2.5	24	91	2	93	27	11	1	59	1.42
301614--301681	22	3.2	21	75	22	70	58	0	0	41	0.98
301991--302063	17	4.2	18	73	20	57	39	0	4	56	1.19
303142--303182	21	2.0	20	85	4	55	12	12	0	75	1.05
303553--303589	16	2.2	17	86	13	51	10	8	0	81	0.89
304409--304442	2	17.0	2	93	0	59	50	2	0	47	1.16
305430--305480	23	2.3	23	79	3	59	68	0	1	29	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
309346--309382	19	1.9	19	88	0	56	35	0	0	64	0.94
309696--309733	9	4.2	9	87	9	51	34	0	0	65	0.93
309700--309798	38	2.6	37	79	16	114	38	0	0	61	0.96
310151--310237	15	5.5	15	70	18	52	58	1	0	40	1.05
310133--310220	19	5.0	17	75	17	65	59	1	0	39	1.05
310462--310506	19	2.4	19	88	7	65	53	6	2	37	1.40
312327--312412	18	4.6	18	71	15	66	40	1	1	56	1.14
312331--312413	30	2.9	30	73	18	86	40	1	1	56	1.15
312577--312624	15	3.1	15	76	23	55	54	0	2	43	1.12
312583--312660	15	4.9	17	68	24	53	53	1	1	43	1.16
313801--313862	33	1.9	32	87	12	92	56	1	0	41	1.09
314415--314453	19	2.0	20	85	5	53	38	0	0	61	0.96
314777--314818	18	2.3	19	91	4	68	35	0	0	64	0.94
315177--315235	22	2.7	23	86	5	77	67	0	1	30	1.00
315178--315238	11	5.5	11	75	14	63	65	0	1	32	1.02
315201--315296	16	5.6	16	71	21	52	59	1	1	38	1.11
315177--315264	33	2.7	32	75	8	88	63	0	1	35	1.02
315198--315247	22	2.3	20	90	10	73	62	0	0	38	0.96
315213--315296	17	4.9	17	71	22	52	58	1	1	39	1.14
315597--315643	8	5.8	8	79	20	53	46	0	2	51	1.13
315752--315824	31	2.5	28	80	6	83	39	4	2	53	1.34
316300--316335	3	12.0	3	87	0	54	66	0	5	27	1.13
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
317190--317246	16	3.4	17	75	7	53	54	1	3	40	1.28
317848--317897	25	2.0	26	84	4	66	44	14	10	32	1.78
318381--318437	16	3.4	17	75	7	53	54	1	3	40	1.28
319039--319088	25	2.0	26	84	4	66	44	14	10	32	1.78
319571--319627	16	3.4	17	75	7	53	54	1	3	40	1.28
321237--321270	17	2.1	16	88	5	50	64	0	0	35	0.94
322825--322861	18	2.1	19	85	10	51	24	10	18	45	1.81
331846--331885	6	6.7	6	97	0	71	52	2	15	30	1.55
332498--332560	32	2.0	30	85	11	83	23	0	6	69	1.11
332596--332690	42	2.3	42	78	12	106	41	0	2	56	1.11
332596--332676	43	1.9	43	82	12	105	40	0	2	56	1.12
332661--332697	18	2.0	20	89	10	60	40	0	0	59	0.97
338394--338431	20	2.0	20	89	5	60	50	7	31	10	1.66
338498--338552	21	2.4	22	76	14	58	45	0	1	52	1.11
338521--338590	35	2.0	36	83	13	92	55	0	0	44	0.99
339083--339110	13	2.2	13	100	0	56	32	0	0	67	0.91
339513--339568	23	2.5	24	77	16	66	42	0	0	57	0.99
339513--339574	12	5.4	12	75	14	60	43	0	0	56	0.99
339882--339922	20	2.0	20	85	0	55	43	2	4	48	1.37
340417--340470	22	2.5	22	87	6	74	53	1	1	42	1.22
342189--342239	24	2.1	24	85	0	66	33	0	5	60	1.21
342211--342253	18	2.3	18	81	14	52	41	0	2	55	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
342211--342253	19	2.3	19	84	11	54	41	0	2	55	1.12
344288--344325	2	19.0	2	88	0	58	47	2	47	2	1.30
344907--344959	22	2.4	22	90	0	88	50	7	0	41	1.30
345269--345334	30	2.2	30	84	10	82	53	0	0	46	1.00
345413--345450	20	1.9	20	88	0	58	34	0	0	65	0.93
345697--345739	17	2.5	17	81	11	52	46	13	2	37	1.57
345692--345740	25	2.0	25	83	0	62	44	14	2	38	1.56
345994--346039	18	2.6	18	92	0	74	32	2	4	60	1.28
349077--349106	13	2.3	13	94	0	51	53	3	6	36	1.44
352064--352113	20	2.6	20	85	14	70	62	0	0	38	0.96
352083--352126	15	2.9	14	81	15	52	56	0	0	43	0.99
352077--352137	31	2.1	29	82	14	74	59	0	0	40	0.98
352184--352250	25	2.5	26	81	15	68	58	4	0	37	1.19
352252--352289	20	1.9	20	94	0	67	23	15	5	55	1.61
353316--353367	14	3.6	14	78	14	61	67	0	0	32	0.91
353417--353471	25	2.2	25	80	6	67	43	0	3	52	1.18
353455--353568	39	3.1	39	69	24	102	57	0	0	42	0.99
353525--353575	11	4.6	11	83	9	68	66	0	0	33	0.92
353628--353669	13	3.4	13	77	12	52	54	0	0	45	0.99
353919--353949	16	2.0	15	93	6	53	38	0	3	58	1.15
353988--354061	21	3.6	20	70	13	60	58	0	0	41	0.98
354034--354063	15	2.0	15	93	0	51	56	0	0	43	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
354101--354168	28	2.6	26	84	11	77	42	1	0	55	1.08
354141--354184	15	2.9	15	79	3	52	47	0	0	52	1.00
355436--355486	24	2.1	24	89	7	77	66	0	0	33	0.92
355996--356042	19	2.4	19	82	10	60	48	2	0	48	1.13
356235--356280	23	2.0	23	91	0	74	39	17	8	34	1.80
356500--356540	14	3.1	14	79	13	50	41	0	0	58	0.98
356747--356778	14	2.1	16	88	11	50	65	3	0	31	1.08
356763--356816	19	2.7	20	80	13	67	66	0	0	33	0.92
356736--356802	33	2.1	34	83	13	88	62	1	2	32	1.19
357166--357222	29	2.0	28	83	16	73	36	0	0	63	0.95

Tables:   1   2   3   4   5