genome.fa.s433.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold433
Parameters: 2 7 7 80 10 50 1000
Length:  558157

Tables:   1   2   3   4   5   

This is table  4  of  5  ( 567 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
357131--357228	22	4.3	23	73	21	66	38	0	0	61	0.96
357514--357556	17	2.6	16	82	13	52	44	0	2	53	1.13
357543--357613	27	2.6	27	75	4	70	56	1	0	42	1.08
358760--358791	6	5.3	6	96	0	55	78	0	0	21	0.76
358829--358866	19	2.0	19	85	10	51	36	2	0	60	1.11
359128--359196	27	2.6	27	75	13	70	44	0	0	55	0.99
359438--359463	8	3.2	8	100	0	52	50	0	11	38	1.39
359625--359651	7	3.9	7	100	0	54	44	0	0	55	0.99
364316--364344	13	2.3	13	94	5	51	68	0	6	24	1.13
364621--364663	17	2.5	17	82	14	52	51	0	0	48	1.00
372049--372128	36	2.2	37	80	6	92	60	0	0	40	0.97
372257--372283	3	9.0	3	100	0	54	33	0	0	66	0.92
372618--372644	8	3.4	8	100	0	54	29	0	0	70	0.88
375155--375205	21	2.5	20	78	9	57	39	0	49	11	1.40
381815--381861	2	23.5	2	100	0	94	48	0	0	51	1.00
382173--382246	34	2.2	33	83	9	87	62	0	0	37	0.96
382222--382250	13	2.1	14	93	6	51	72	0	0	27	0.85
388202--388226	12	2.1	12	100	0	50	0	0	32	68	0.90
393619--393658	21	1.9	21	89	0	62	40	7	0	52	1.30
393962--394015	29	1.9	29	85	7	76	48	0	3	48	1.19
396693--396725	2	16.5	2	100	0	66	51	0	0	48	1.00
397320--397351	2	16.5	2	93	6	57	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
397344--397407	11	6.4	11	68	17	50	64	0	3	32	1.10
397336--397391	27	2.0	29	93	6	98	64	0	0	35	0.94
397330--397409	27	2.9	28	80	14	94	62	0	2	35	1.09
397555--397662	7	15.1	7	69	21	55	65	0	0	34	0.93
397550--397619	31	2.2	32	87	7	99	67	0	0	32	0.91
397569--397667	21	4.9	20	70	19	64	64	0	0	35	0.94
397604--397644	20	1.9	21	85	14	57	53	0	0	46	1.00
403776--403848	34	2.1	34	87	0	101	35	17	15	31	1.91
408856--408894	15	2.7	14	84	7	51	48	0	5	46	1.24
419363--419396	13	2.6	13	86	13	52	41	0	0	58	0.98
419818--419863	21	2.2	21	84	3	58	63	0	0	36	0.95
420842--420876	11	3.3	10	88	11	52	77	0	0	22	0.78
421492--421583	45	2.0	45	91	0	148	42	7	9	40	1.66
421992--422191	110	1.8	109	85	3	285	31	13	5	50	1.62
425655--425818	50	3.3	50	94	0	292	42	14	26	15	1.86
426357--426456	43	2.5	39	84	12	116	35	39	19	7	1.78
426386--426456	18	3.9	18	77	14	74	33	38	21	7	1.80
427383--427509	53	2.5	50	80	12	132	29	24	12	33	1.92
427440--427665	79	2.9	79	93	0	380	27	24	14	33	1.94
427599--427797	51	3.9	51	82	5	231	27	23	13	36	1.92
428903--429199	118	2.6	114	84	4	398	31	16	17	34	1.92
430113--430205	24	3.9	24	75	8	82	34	20	20	24	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
430113--430211	48	2.1	48	86	7	139	32	19	21	27	1.97
430669--430695	2	13.5	2	100	0	54	48	0	0	51	1.00
432762--432817	18	3.2	18	74	2	51	55	3	1	39	1.28
432796--432843	17	2.8	18	71	22	50	56	6	2	35	1.36
432777--432843	32	2.1	33	94	2	118	52	5	2	38	1.41
433020--433061	2	20.5	2	86	13	59	47	4	0	47	1.23
435571--435632	20	3.1	20	86	9	74	32	0	3	64	1.09
436581--436620	16	2.7	14	82	14	53	55	5	7	32	1.50
437567--437978	211	2.0	211	97	0	779	27	6	15	49	1.70
439169--439194	2	13.0	2	100	0	52	50	0	0	50	1.00
441908--441938	15	2.1	15	100	0	62	12	6	6	74	1.21
443969--443997	14	2.1	14	100	0	58	58	0	13	27	1.36
444342--444382	13	3.0	13	82	10	55	14	0	2	82	0.76
444341--444381	20	2.2	19	86	8	57	12	0	2	85	0.70
445610--445653	20	2.2	20	83	0	52	31	2	22	43	1.66
452559--452609	2	25.5	2	88	7	77	52	0	1	45	1.12
452988--453035	23	2.2	21	85	7	60	62	6	6	25	1.42
452988--453043	23	2.5	21	77	11	58	60	7	5	26	1.44
454349--454602	129	2.0	127	91	2	411	29	16	12	40	1.86
454888--454934	24	1.9	25	86	4	69	31	0	4	63	1.13
455736--455771	18	2.0	18	88	0	54	38	2	0	58	1.13
457490--457532	22	2.0	22	86	9	61	58	0	0	41	0.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
458229--458259	2	15.5	2	93	0	53	51	3	0	45	1.17
458718--458756	11	3.2	12	85	10	53	33	0	2	64	1.08
458718--458766	24	2.0	24	84	7	64	30	0	6	63	1.19
459531--459611	5	14.5	6	72	18	52	30	1	1	66	1.07
459535--459611	10	7.4	11	75	15	74	31	1	1	66	1.08
459557--459604	22	2.1	23	88	3	71	29	2	0	68	1.01
459535--459623	25	3.2	27	82	10	101	30	2	3	64	1.22
460988--461025	3	12.7	3	100	0	76	34	0	0	65	0.93
461875--461944	21	3.3	21	72	20	65	61	0	0	38	0.96
461885--461944	23	2.5	25	78	13	81	61	0	0	38	0.96
461964--462041	30	2.7	29	75	16	81	61	1	0	37	1.04
461876--462021	79	1.9	78	81	12	183	58	0	0	41	0.98
462326--462411	12	7.4	12	71	15	65	56	0	0	43	0.99
462350--462428	19	4.3	19	71	16	67	55	0	0	44	0.99
462326--462389	32	2.0	33	84	9	87	54	0	0	45	0.99
463073--463147	18	3.6	21	69	20	59	46	0	2	50	1.15
463139--463169	16	1.9	16	93	0	53	58	0	0	41	0.98
463964--464002	15	2.7	15	88	4	53	56	0	0	43	0.99
464374--464409	5	7.6	5	87	12	58	63	0	0	36	0.94
464364--464437	25	3.0	25	73	15	71	58	0	1	40	1.07
464377--464409	14	2.4	14	100	0	66	63	0	0	36	0.95
465324--465401	38	2.1	36	84	11	97	55	0	0	44	0.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
465371--465420	26	1.9	26	84	15	68	46	2	0	52	1.12
466973--467074	8	10.9	10	70	21	55	37	0	0	60	1.10
466991--467078	20	4.6	20	75	12	85	39	2	1	56	1.19
467002--467071	22	3.2	22	74	12	63	40	0	1	58	1.07
467006--467080	27	2.6	29	80	14	93	41	1	1	56	1.16
466984--467098	7	16.6	7	67	15	60	38	1	0	59	1.14
467239--467277	2	19.5	2	83	0	51	53	5	0	41	1.23
467239--467277	12	3.2	12	92	0	60	53	5	0	41	1.23
467495--467549	11	5.0	11	77	0	56	65	1	12	20	1.35
467495--467566	33	2.2	33	87	2	99	63	2	16	16	1.42
467901--467944	21	2.1	21	86	0	61	40	0	0	59	0.98
467881--467941	29	2.0	31	87	12	92	37	0	1	60	1.07
468501--468534	3	11.3	3	100	0	68	32	0	0	67	0.91
469250--469276	4	6.8	4	100	0	54	48	0	0	51	1.00
469586--469619	13	2.7	12	83	16	50	44	0	0	55	0.99
470175--470227	20	2.6	19	76	8	52	47	0	1	50	1.12
470921--470993	27	2.7	28	77	12	80	49	0	1	49	1.09
470972--471013	13	2.9	15	79	13	52	45	0	0	54	0.99
471620--471666	21	2.2	21	84	0	58	42	0	8	48	1.33
471639--471686	22	2.1	22	84	3	60	37	0	8	54	1.31
472466--472494	3	9.7	3	100	0	58	68	0	0	31	0.89
472979--473049	21	3.6	20	70	16	67	43	0	2	53	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
473009--473062	22	2.5	21	77	14	56	48	0	3	48	1.19
474445--474501	30	1.9	30	96	0	105	31	1	17	49	1.57
475078--475103	12	2.2	12	100	0	52	42	0	0	57	0.98
475204--475250	6	7.8	6	90	0	58	46	10	4	38	1.58
478012--478113	53	1.9	53	83	0	132	58	3	8	28	1.46
481667--481885	34	6.4	33	82	6	240	42	26	5	24	1.77
481667--481885	68	3.2	68	91	3	334	42	26	5	24	1.77
485983--486034	19	2.7	19	84	0	77	38	11	15	34	1.83
486352--486483	34	3.9	34	81	0	138	44	22	4	28	1.72
486336--486483	68	2.2	68	86	0	197	45	23	4	27	1.71

Tables:   1   2   3   4   5