genome.fa.s440.2.7.7.80.10.50.1000.6.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold440
Parameters: 2 7 7 80 10 50 1000
Length:  783396

Tables:   1   2   3   4   5   6   

This is table  6  of  6  ( 683 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
667760--667814	20	2.8	20	80	5	67	29	16	12	41	1.85
670340--670412	28	2.6	28	86	0	110	23	28	20	27	1.99
670368--670625	79	3.3	79	79	0	221	28	24	12	34	1.92
671696--671721	13	2.0	13	100	0	52	30	15	15	38	1.88
671676--671739	32	2.0	33	90	3	103	28	14	15	42	1.86
686334--686458	51	2.4	52	94	1	216	27	18	17	36	1.93
686334--686478	51	2.8	50	88	5	202	28	17	17	35	1.94
686467--686491	13	1.9	13	100	0	50	36	16	16	32	1.90
686534--686627	19	5.6	18	71	28	82	35	17	12	35	1.87
686553--686609	13	3.9	13	76	24	60	33	17	14	35	1.90
686532--686627	32	3.0	32	96	1	174	35	16	12	35	1.87
687371--687595	48	4.6	48	82	2	225	32	19	25	23	1.97
687378--687599	97	2.3	97	84	3	284	31	19	25	22	1.98
687365--687730	48	8.0	43	70	21	176	30	19	25	24	1.98
687642--687770	49	2.6	50	82	1	152	31	18	25	24	1.98
687847--688374	29	17.9	29	81	9	495	25	16	29	28	1.96
687847--688374	86	6.0	85	79	9	463	25	16	29	28	1.96
687949--688023	35	2.2	35	87	2	116	34	10	33	21	1.88
687999--688374	144	2.6	142	90	3	468	24	16	30	28	1.97
689816--689898	28	3.0	28	84	8	98	1	4	12	81	0.89
689813--689884	24	3.2	23	81	13	87	0	5	12	81	0.84
703848--703913	32	2.0	33	91	2	107	34	16	13	34	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
705149--705202	17	3.2	16	89	7	72	87	9	1	1	0.71
705151--705191	12	3.3	12	86	13	57	87	9	0	2	0.62
706176--706552	61	6.4	59	86	7	454	26	27	20	25	1.99
706410--706702	160	1.8	158	88	5	446	25	28	19	26	1.99
706468--706648	99	1.8	99	91	2	301	26	28	18	25	1.98
706567--706770	61	3.3	60	85	5	259	25	26	20	27	1.99
706754--706887	42	3.1	42	78	7	110	17	26	14	41	1.88
707749--707774	13	2.0	13	100	0	52	30	15	15	38	1.88
707729--707899	33	5.0	33	68	17	116	29	16	14	39	1.88
707813--707920	20	5.8	19	72	21	86	29	17	12	40	1.86
707850--707879	13	2.3	13	94	0	51	33	16	10	40	1.82
710347--710519	76	2.2	76	81	5	186	26	24	16	32	1.96
710491--710547	28	2.0	28	86	6	80	21	28	22	28	1.99
710502--710782	79	3.6	79	81	1	314	25	24	16	33	1.96
712679--712800	45	2.7	46	93	2	210	28	23	18	28	1.98
718906--718984	6	13.8	6	85	10	112	17	32	34	15	1.91
720779--720814	2	18.5	2	94	5	65	50	0	0	50	1.00
721704--721809	53	2.0	53	92	0	176	28	16	29	26	1.96
723621--723654	12	2.8	12	86	0	50	55	26	17	0	1.42
725213--725396	98	1.9	98	91	0	305	32	18	26	22	1.97
734043--734171	52	2.5	52	96	0	231	28	17	17	35	1.93
734180--734204	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
734243--734344	19	6.1	17	70	27	76	37	16	11	34	1.85
734266--734322	13	3.9	13	72	24	51	35	15	14	35	1.88
734246--734342	32	3.0	32	93	1	167	36	16	12	35	1.86
743299--743427	52	2.5	52	96	0	231	28	17	17	35	1.93
743535--743600	20	3.7	20	73	26	83	34	18	12	34	1.88
743502--743599	33	3.0	33	95	1	171	34	16	12	36	1.86
743555--743579	13	1.9	13	100	0	50	32	16	16	36	1.90
748347--748381	15	2.3	15	95	0	61	34	17	8	40	1.80
749201--749233	13	2.8	12	90	9	50	72	9	6	12	1.26
750641--750681	1	41.0	1	85	0	55	92	2	4	0	0.44
750641--750681	13	3.1	13	86	6	64	92	2	4	0	0.44
750640--750681	21	2.0	21	90	9	68	90	4	4	0	0.55
751708--751846	72	1.9	72	82	7	176	27	22	12	37	1.91
751931--752183	62	4.1	60	77	9	215	24	20	18	36	1.94
752117--752524	70	5.7	70	73	7	291	25	23	13	37	1.91
752937--752993	20	2.8	20	91	2	87	36	7	22	33	1.81
753056--753193	51	2.7	50	83	6	170	33	15	11	39	1.83
755491--755896	81	5.1	80	78	7	373	28	24	12	35	1.91
755492--755896	80	5.1	81	76	7	330	28	24	12	35	1.91
755546--755896	159	2.2	159	82	5	424	28	23	11	35	1.90
759396--759468	36	2.0	36	94	0	128	34	19	21	24	1.96
765374--765484	58	1.9	59	84	1	152	30	23	11	34	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
765373--765505	58	2.3	59	80	2	151	30	26	10	32	1.90
766134--778514	7	1793.9	7	79	14	12169	44	40	2	12	1.54
766176--766227	15	3.6	15	82	14	65	42	40	7	9	1.66
766141--766227	30	3.2	28	78	15	92	43	40	5	10	1.63
768250--768293	11	3.7	11	82	11	52	40	47	0	11	1.39
778512--780465	1	1954.0	1	87	0	2603	6	92	0	0	0.41
778519--780465	699	2.7	694	90	5	2888	6	92	0	0	0.41
780463--781985	7	219.4	7	79	14	1397	44	41	2	12	1.55
781949--781986	8	4.9	8	84	15	53	36	55	0	7	1.29
781931--781986	15	3.7	15	76	6	60	39	51	0	8	1.33
781985--782069	26	3.2	26	81	5	98	40	60	0	0	0.97
781996--782061	32	2.1	31	85	2	87	37	62	0	0	0.96
782069--782255	7	27.0	7	82	7	215	28	54	12	4	1.57
782306--782352	20	2.3	20	85	0	58	34	44	10	10	1.74
782560--782592	14	2.3	15	89	5	50	39	48	9	3	1.50
782654--782705	7	7.3	7	78	4	50	38	55	1	3	1.29
782661--782703	22	1.9	23	85	4	61	41	53	2	2	1.26

Tables:   1   2   3   4   5   6

The End!