genome.fa.s450.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold450
Parameters: 2 7 7 80 10 50 1000
Length:  725389

Tables:   1   2   3   4   5   

This is table  4  of  5  ( 559 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
462592--463125	264	2.0	264	90	0	845	32	18	19	29	1.96
463524--463549	13	2.0	13	100	0	52	30	23	7	38	1.83
464183--464338	50	3.1	50	95	0	269	27	17	15	39	1.89
466661--466808	79	1.9	79	84	2	199	29	26	14	30	1.95
466741--466859	51	2.3	51	84	4	141	31	29	10	29	1.90
466841--466895	27	2.0	28	89	6	87	21	29	16	32	1.95
466791--467019	79	2.9	78	86	3	307	27	28	13	30	1.95
466659--466937	130	2.2	130	84	1	364	28	27	13	30	1.94
471704--471805	33	3.1	32	88	5	134	34	10	16	38	1.84
471843--471867	13	1.9	13	100	0	50	32	16	16	36	1.90
471876--471985	41	2.5	46	78	18	144	33	19	19	28	1.96
480018--480146	52	2.5	52	92	0	222	28	17	17	36	1.93
480018--480166	52	2.9	51	79	9	176	30	17	16	34	1.93
480152--480179	13	2.2	13	100	0	56	39	17	14	28	1.89
480241--480265	13	1.9	13	100	0	50	32	16	16	36	1.90
480220--480285	33	2.0	33	94	2	116	36	18	12	33	1.88
480254--480306	20	2.7	20	100	0	106	35	22	11	30	1.89
480930--481302	52	7.2	55	66	14	198	32	15	28	24	1.95
480914--481421	154	3.3	154	92	0	820	33	15	27	23	1.95
481380--481622	49	5.1	48	76	11	198	30	17	25	26	1.97
481375--481609	98	2.5	93	77	7	249	30	17	25	26	1.97
481656--481729	27	2.6	28	91	6	123	27	18	29	24	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
481714--481835	34	3.6	33	79	6	129	37	9	31	21	1.86
497076--497199	52	2.4	51	93	4	205	29	17	18	34	1.94
497076--497219	52	2.8	50	84	13	177	30	17	18	33	1.94
497208--497232	13	1.9	13	100	0	50	36	16	16	32	1.90
497297--497321	13	1.9	13	100	0	50	32	16	16	36	1.90
497275--497341	33	2.0	33	88	0	98	40	13	11	34	1.81
498131--498571	49	8.9	52	87	6	439	31	17	26	24	1.97
498195--498614	49	8.8	49	87	7	616	30	18	26	24	1.98
498186--498614	97	4.5	92	90	5	592	30	18	27	24	1.98
501889--502012	52	2.4	52	91	1	205	26	19	19	34	1.96
501889--502028	52	2.7	51	82	7	176	28	18	19	33	1.95
502107--502131	13	1.9	13	100	0	50	32	16	16	36	1.90
502086--502151	33	2.0	33	91	2	107	37	18	10	33	1.85
502635--502933	155	1.9	154	91	0	481	33	16	27	22	1.95
502891--503121	49	4.8	49	80	6	197	29	19	27	23	1.98
503224--503277	29	1.9	29	92	7	94	24	20	31	24	1.98
503235--503297	27	2.3	27	83	8	74	31	15	30	22	1.95
503793--504074	154	1.8	154	93	0	492	33	14	27	23	1.94
504092--504231	49	2.9	48	82	6	174	26	20	28	25	1.99
504352--504438	27	3.1	27	79	11	86	26	18	31	24	1.98
504413--504479	34	1.9	35	87	3	100	37	13	31	17	1.89
505041--505269	52	4.4	52	68	10	155	31	15	28	24	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
504918--505425	154	3.3	154	92	0	829	33	15	27	23	1.95
505290--505524	49	4.8	48	75	8	179	28	18	28	23	1.98
505521--505618	50	2.0	50	81	4	117	37	13	21	27	1.91
505647--505733	27	3.1	27	82	11	104	26	17	32	24	1.97
505708--505774	34	1.9	35	84	3	91	40	13	29	16	1.87
512687--512934	61	4.1	60	81	2	298	25	26	18	29	1.98
512687--512955	121	2.2	122	85	0	360	26	26	19	28	1.99
512997--513772	123	6.3	123	89	1	1110	25	26	18	29	1.98
512972--513772	61	13.2	61	87	2	1062	25	26	18	29	1.98
514404--514452	20	2.5	20	89	0	80	28	12	12	46	1.77
514434--514463	13	2.3	13	94	0	51	33	16	10	40	1.82
516896--517011	51	2.3	51	84	4	144	31	30	8	29	1.87
516812--517079	130	2.1	130	85	2	360	29	25	12	32	1.92
516944--517166	79	2.8	80	77	9	231	27	25	13	32	1.94
519643--519697	28	2.0	28	92	0	92	34	27	16	21	1.95
519748--519926	28	6.4	27	73	6	88	32	31	16	19	1.94
521492--521524	2	17.0	2	93	6	59	51	0	0	48	1.00
522205--522650	118	3.8	116	76	8	346	34	14	18	33	1.91
522238--522507	117	2.3	117	82	7	325	32	15	18	34	1.92
524254--524964	155	4.6	154	77	5	489	39	23	15	21	1.92
524515--524958	149	2.9	148	80	6	428	39	22	14	23	1.91
525431--525659	127	1.8	126	87	2	343	41	13	13	31	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
526813--526854	18	2.3	18	95	4	75	40	4	26	28	1.76
526972--527370	185	2.1	186	90	1	613	54	8	8	27	1.60
529180--529433	84	3.0	83	68	4	213	42	13	26	16	1.86
529057--529520	168	2.8	167	82	3	450	43	13	25	18	1.86
529216--529491	84	3.3	83	67	8	216	40	13	27	18	1.88
529333--529843	252	2.0	252	79	5	559	42	14	25	17	1.87
529080--529934	420	2.0	419	87	2	1218	43	13	24	18	1.86
529536--529979	168	2.6	167	81	6	522	43	13	25	17	1.86
529958--530313	84	4.3	83	78	8	347	32	13	32	21	1.92
530440--531440	43	23.6	43	70	8	282	32	19	28	19	1.96
530634--531241	85	7.2	85	72	7	331	32	18	28	20	1.96
531076--531406	128	2.6	127	78	5	366	30	20	30	18	1.96
531174--531422	85	2.9	82	78	4	228	32	20	29	18	1.96
531069--531517	42	10.6	41	73	7	231	32	19	30	18	1.95
531228--531463	85	2.8	85	82	5	239	31	19	30	17	1.95
531449--531592	42	3.4	42	74	3	128	31	17	29	21	1.96
531624--531834	43	4.9	43	77	2	199	35	19	28	17	1.94
531623--531834	86	2.5	86	81	6	259	35	19	28	16	1.94
531911--532008	43	2.2	44	76	7	101	31	13	30	24	1.93
536834--536892	31	1.9	31	85	0	82	42	6	15	35	1.73
537213--538147	155	6.1	150	76	8	618	39	20	16	22	1.92
537216--538171	309	3.1	302	74	9	824	39	21	16	23	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
538745--539202	167	2.8	163	84	5	614	44	10	9	35	1.72
540664--541126	165	2.8	164	86	4	610	51	9	9	28	1.66
547468--547514	15	3.1	15	84	6	58	65	0	0	34	0.93
547478--547515	16	2.4	16	91	4	60	71	0	0	28	0.87
548435--548468	16	2.1	16	88	0	50	44	0	0	55	0.99
548684--548716	2	16.5	2	100	0	66	51	0	0	48	1.00
550821--550873	27	2.0	27	96	0	97	35	11	7	45	1.69
551021--551059	20	1.9	20	84	5	51	48	7	2	41	1.45
551583--551616	16	2.1	16	88	0	50	44	0	0	55	0.99
551832--551868	2	18.5	2	100	0	74	51	0	0	48	1.00
552445--552565	58	2.1	59	88	3	181	49	10	7	32	1.65
560068--560181	51	2.2	51	87	3	158	42	14	14	28	1.85
563929--563967	20	1.9	20	84	5	51	48	5	12	33	1.63
567833--567879	18	2.4	20	82	17	71	42	12	19	25	1.86
567841--567881	18	2.3	18	100	0	82	43	9	21	24	1.83
568724--568777	19	2.8	19	82	2	63	38	20	9	31	1.84
568824--568853	13	2.3	13	94	0	51	33	20	10	36	1.86
570795--570949	75	2.1	75	97	0	292	45	10	17	27	1.81
577636--577662	13	2.1	13	100	0	54	37	14	7	40	1.74
577647--577702	19	2.9	19	83	2	76	33	19	12	33	1.89
577747--577776	13	2.3	13	94	0	51	33	20	10	36	1.86
582936--582975	2	20.0	2	100	0	80	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
591950--591996	20	2.4	20	80	13	53	46	2	19	31	1.61
595822--595885	33	2.0	32	87	3	92	28	10	15	45	1.80
595932--595986	20	2.8	20	88	0	74	34	10	21	32	1.89
596735--596792	20	3.0	20	82	2	64	29	8	13	48	1.73
596864--597033	52	3.5	50	81	17	214	34	16	17	31	1.93
596923--597000	41	1.9	41	97	0	147	33	19	17	29	1.95
601049--601078	15	2.0	15	93	0	51	30	0	40	30	1.57
605423--605494	27	2.7	27	100	0	144	19	19	37	23	1.94
607697--607771	20	3.8	20	76	3	80	42	10	12	34	1.77
607694--607771	40	2.0	39	85	7	104	42	11	11	34	1.77

Tables:   1   2   3   4   5