genome.fa.s450.2.7.7.80.10.50.1000.5.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold450
Parameters: 2 7 7 80 10 50 1000
Length:  725389

Tables:   1   2   3   4   5   

This is table  5  of  5  ( 559 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
608328--609358	29	35.1	29	82	7	1217	21	16	32	28	1.95
610582--610642	9	6.7	9	83	9	63	1	1	9	86	0.70
610582--610643	1	62.0	1	73	0	52	1	1	9	87	0.69
610582--610642	22	2.7	22	85	12	79	1	1	9	86	0.70
610582--610643	13	5.1	12	83	13	74	1	1	9	87	0.69
610582--610644	24	2.6	24	87	9	85	1	1	11	85	0.73
610602--610643	14	3.2	14	90	9	63	0	0	9	90	0.45
610582--610643	33	1.9	32	90	3	97	1	1	9	87	0.69
619382--619406	13	1.9	13	100	0	50	36	16	16	32	1.90
619459--619523	19	3.7	19	75	23	79	40	16	10	32	1.84
619452--619521	32	2.2	32	94	0	122	38	17	11	32	1.85
626355--626430	20	3.8	19	79	6	89	40	11	13	34	1.81
626352--626430	40	2.0	39	90	2	122	40	12	12	34	1.81
639979--640113	50	2.7	50	83	0	162	25	18	12	42	1.86
642506--642871	158	2.3	157	80	5	382	26	23	13	36	1.92
642469--642871	79	5.1	79	76	8	345	27	23	12	36	1.91
645169--646153	246	4.0	246	94	0	1682	33	9	12	44	1.75
646353--646793	165	2.6	165	76	6	401	31	11	8	48	1.69
648436--648773	157	2.2	156	82	7	432	23	14	20	40	1.90
651449--651479	16	1.9	16	93	0	53	25	0	12	61	1.32
652075--652134	32	1.9	31	83	10	77	81	3	10	5	0.95
652464--652511	18	2.5	18	81	18	53	81	4	4	10	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
653089--653305	112	1.9	113	85	2	303	34	13	13	38	1.84
653660--653903	46	5.3	46	79	4	269	43	13	22	20	1.87
654133--654284	51	3.1	51	61	30	121	20	8	25	45	1.79
654131--654321	96	2.0	96	98	0	373	21	9	25	43	1.82
654419--654645	88	2.6	88	85	1	303	33	14	25	27	1.94
654997--655021	13	1.9	13	100	0	50	36	16	16	32	1.90
655106--655204	52	1.9	52	91	4	164	32	18	17	32	1.94
659883--659908	13	2.0	13	100	0	52	38	15	15	30	1.88
665622--665685	11	5.9	10	79	18	58	85	12	1	0	0.66
665622--665685	14	4.5	14	79	11	67	85	12	1	0	0.66
665622--665673	1	52.0	1	76	0	50	88	9	1	0	0.59
665924--665966	17	2.6	16	81	3	50	81	9	9	0	0.88
666906--666956	13	3.6	13	78	19	57	31	13	17	37	1.89
666888--666948	17	3.7	17	77	20	67	31	13	19	36	1.90
666874--666956	32	2.7	32	88	3	125	31	12	19	37	1.88
667001--667025	13	1.9	13	100	0	50	32	16	16	36	1.90
667034--667162	52	2.5	52	92	0	222	35	17	17	29	1.93
670580--670691	30	3.7	30	87	1	152	25	28	18	26	1.98
670695--671151	36	13.5	34	76	15	317	20	32	12	34	1.90
670672--670929	134	1.9	132	83	8	326	22	33	12	32	1.91
670728--671126	100	4.0	100	94	1	647	20	31	13	35	1.90
670767--671175	100	4.1	95	87	7	362	20	31	13	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
671171--672718	49	33.0	47	78	11	1414	24	25	18	31	1.97
671171--672660	92	16.0	92	89	4	1748	24	25	18	31	1.97
671606--671673	21	3.2	20	66	25	50	26	27	17	27	1.98
671983--672048	21	3.1	21	62	33	50	28	24	15	31	1.95
671990--672058	22	3.2	22	64	25	56	26	27	15	30	1.96
672002--672070	22	3.2	22	64	25	56	28	26	15	28	1.96
671171--672660	455	3.2	453	85	8	1848	24	25	18	31	1.97
672104--672171	21	3.2	21	65	19	50	25	23	19	32	1.97
672218--672718	101	5.0	101	89	2	704	23	26	17	33	1.96
672441--672758	52	6.2	52	80	7	156	23	26	16	33	1.96
673409--673472	19	3.7	18	75	25	75	31	12	17	39	1.87
673430--673454	13	1.9	13	100	0	50	36	16	16	32	1.90
673411--673481	32	2.2	32	94	0	124	30	14	18	36	1.90
673559--673687	52	2.5	52	93	0	195	36	17	17	28	1.93
675094--675389	156	2.0	149	86	7	411	29	17	14	38	1.89
677682--678069	85	4.6	87	78	7	300	16	19	15	48	1.82
677854--678076	84	2.6	85	85	4	299	17	21	13	47	1.82
679130--679491	165	2.2	165	81	7	437	30	9	8	51	1.64
679810--679858	24	2.0	24	84	7	64	75	4	12	8	1.16
695890--696064	86	2.0	86	100	0	350	33	20	17	29	1.95
704467--704511	22	2.0	22	87	8	65	77	17	0	4	0.92
705704--705776	26	2.8	27	72	19	73	34	13	16	35	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
705781--706358	28	20.6	28	82	5	584	28	30	17	23	1.97
707060--707122	24	2.6	24	100	0	126	30	19	9	41	1.83
715099--715129	13	2.4	13	94	0	53	54	3	0	41	1.16
716942--717189	97	2.6	96	74	10	270	37	10	22	29	1.87
718610--718648	20	1.9	21	94	5	71	41	20	23	15	1.90
720663--720858	35	5.7	35	83	6	233	30	25	10	33	1.90
720688--720858	66	2.5	66	86	5	236	30	25	9	33	1.89
720656--720857	101	2.0	100	88	2	298	30	25	10	33	1.89
721424--721522	32	3.0	33	80	12	107	33	26	10	30	1.89
721424--721483	31	2.0	30	87	9	86	31	26	13	28	1.94
721424--721522	37	3.0	33	79	10	96	33	26	10	30	1.89
723883--723908	13	2.0	13	100	0	52	38	15	15	30	1.88
724367--724433	37	1.9	35	88	11	102	32	11	25	29	1.92

Tables:   1   2   3   4   5

The End!