genome.fa.s465.2.7.7.80.10.50.1000.3.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold465
Parameters: 2 7 7 80 10 50 1000
Length:  646967

Tables:   1   2   3   4   

This is table  3  of  4  ( 472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
357866--357931	20	3.7	20	73	26	83	34	15	12	37	1.84
361610--361634	13	1.9	13	100	0	50	36	16	16	32	1.90
363264--363288	13	1.9	13	100	0	50	32	20	16	32	1.94
363279--363365	33	2.6	33	98	0	165	37	9	18	34	1.83
363393--363467	22	3.5	22	85	3	91	40	9	24	26	1.85
363586--363626	21	2.0	21	85	9	57	36	12	14	36	1.84
369117--369195	22	3.6	22	91	0	122	37	10	22	29	1.87
369117--369213	22	4.5	22	87	2	117	39	9	23	27	1.85
369332--369372	21	2.0	21	85	9	57	36	12	14	36	1.84
369844--369868	13	1.9	13	100	0	50	32	16	16	36	1.90
369857--369909	20	2.7	20	96	0	97	41	15	16	26	1.88
376152--376177	13	2.0	13	100	0	52	38	15	15	30	1.88
376134--376198	32	2.0	32	87	6	94	40	18	13	27	1.89
379994--380143	52	2.9	53	76	3	169	34	18	22	24	1.96
380098--380224	43	3.0	43	79	0	146	32	18	22	26	1.97
380098--380376	52	6.0	43	78	7	180	33	17	24	25	1.96
380178--380329	52	2.9	52	89	0	232	34	15	25	25	1.95
380282--380376	44	2.2	43	88	1	136	35	17	23	23	1.95
381439--381546	51	2.1	51	86	6	148	31	15	25	27	1.96
381612--381680	28	2.5	28	92	0	120	27	18	30	23	1.98
381530--381730	107	1.9	107	85	0	276	31	13	26	27	1.94
383956--384008	20	2.7	20	91	5	81	45	15	13	26	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
384702--385002	43	6.8	43	74	14	231	41	13	26	18	1.87
384746--384988	135	1.8	134	84	7	341	40	13	26	19	1.88
384703--385002	88	3.4	88	80	11	328	42	13	26	18	1.87
384703--384996	45	6.7	43	73	16	203	41	13	26	18	1.87
384992--385493	60	8.2	61	86	2	535	29	19	26	24	1.99
384998--385493	61	8.1	61	85	3	525	28	19	26	24	1.99
386197--386254	28	2.1	29	87	12	86	50	0	0	50	1.00
386282--386345	31	2.1	31	82	5	76	39	0	1	59	1.07
386453--386499	20	2.3	21	88	3	69	40	0	0	59	0.97
388195--388233	15	2.6	15	83	0	51	46	0	2	51	1.14
389016--389063	20	2.3	21	82	10	55	52	0	2	45	1.12
389399--389461	20	3.2	20	80	6	67	50	9	3	36	1.51
390647--390687	21	2.0	21	100	0	82	41	14	4	39	1.67
391005--391158	78	2.0	78	81	2	184	50	12	4	32	1.61
391093--391151	20	3.0	20	78	9	66	49	15	3	32	1.61
391291--391375	21	4.1	21	73	11	77	52	14	2	30	1.53
392210--392262	19	2.7	20	82	2	63	30	16	18	33	1.94
395582--395637	20	2.8	20	86	5	78	28	17	12	41	1.86
397342--397367	13	2.0	13	100	0	52	30	15	15	38	1.88
404041--404069	13	2.1	14	93	6	51	13	0	6	79	0.93
404688--404910	51	4.4	50	74	8	198	28	26	11	33	1.91
404847--404994	79	1.9	79	81	5	183	29	24	12	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
404896--405094	107	1.9	107	84	4	267	27	25	16	31	1.97
405034--405146	51	2.2	51	81	10	133	33	24	7	34	1.83
405084--405309	79	2.9	78	80	6	267	30	24	11	34	1.91
406541--406728	94	2.0	94	96	0	349	32	21	17	28	1.96
409304--409371	32	2.1	34	83	10	88	22	0	22	55	1.43
412010--412066	19	2.9	19	84	2	78	31	19	17	31	1.95
413436--413489	27	2.0	27	100	0	108	29	18	7	44	1.77
416723--416773	20	2.6	19	87	6	66	50	11	3	33	1.57
416736--416792	19	2.9	19	79	7	60	52	12	3	31	1.55
416813--416856	21	2.2	20	83	4	52	47	18	2	31	1.61
416938--416991	20	2.7	20	85	2	72	38	9	18	33	1.83
417088--417168	40	2.0	40	83	4	101	30	17	9	41	1.82
420651--420690	21	1.9	21	94	0	71	60	10	0	30	1.30
421521--421901	165	2.3	167	80	6	407	29	9	9	50	1.66
428869--429004	68	2.0	68	97	0	254	41	8	16	33	1.78
429228--429300	20	3.6	20	81	3	101	35	13	19	31	1.91
429246--429321	21	3.7	21	80	3	100	42	11	17	28	1.84
429228--429321	41	2.3	41	98	0	179	39	12	18	29	1.88
429360--429385	13	2.0	13	100	0	52	38	15	15	30	1.88
433451--433481	15	2.1	15	93	0	53	48	16	22	12	1.80
435495--435573	20	3.7	21	75	15	72	26	13	15	44	1.84
435560--435598	13	3.0	13	96	0	69	30	17	15	35	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
438037--438109	20	3.6	20	81	3	101	35	13	19	31	1.91
438055--438130	21	3.7	21	80	3	100	42	11	17	28	1.84
438037--438130	41	2.3	41	98	0	179	39	12	18	29	1.88
438169--438194	13	2.0	13	100	0	52	38	15	15	30	1.88
439223--439248	13	2.0	13	100	0	52	38	15	15	30	1.88
441474--441518	21	2.1	21	84	8	56	53	4	20	22	1.63
443323--443353	15	2.1	15	93	0	53	48	16	22	12	1.80
445432--445457	13	2.0	13	100	0	52	30	15	15	38	1.88
448003--448028	13	2.0	13	100	0	52	38	15	15	30	1.88
449211--449238	6	4.7	6	100	0	56	64	0	35	0	0.94
451930--452334	170	2.4	166	83	6	501	36	10	13	40	1.78
455924--455981	20	2.7	22	86	5	84	41	13	17	27	1.87
457192--457218	9	3.0	9	100	0	54	88	0	0	11	0.50
457228--457372	31	4.7	31	85	10	190	24	31	19	24	1.98
457228--457399	62	2.8	61	80	13	203	25	31	18	24	1.97
457376--457648	34	7.9	34	87	7	372	20	32	12	34	1.89
457376--457648	70	4.0	68	91	4	406	20	32	12	34	1.89
457650--457747	32	3.1	31	91	5	160	27	37	18	16	1.92
457655--457747	33	2.9	32	93	6	161	29	36	19	15	1.92
457752--458212	49	9.5	49	84	8	586	24	25	17	32	1.97
457752--458279	92	5.3	101	91	5	732	24	25	17	33	1.96
458126--458509	67	6.7	55	72	14	264	24	23	14	37	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
457792--458280	242	2.0	235	82	7	586	24	25	17	32	1.96
458126--458520	171	2.3	171	93	1	682	24	24	14	37	1.92
459260--459326	33	2.0	33	88	0	98	34	11	13	40	1.81
459280--459304	13	1.9	13	100	0	50	36	16	16	32	1.90
459371--459395	13	1.9	13	100	0	50	32	16	16	36	1.90
462705--462747	21	2.0	21	100	0	86	27	23	20	27	1.99
466379--466459	1	81.0	1	75	0	72	87	12	0	0	0.54
466381--466459	11	6.9	11	85	8	104	87	12	0	0	0.55
466379--466459	13	6.3	13	82	12	96	87	12	0	0	0.54
466381--466459	35	2.2	36	90	2	124	87	12	0	0	0.55
466795--466825	1	31.0	1	93	0	53	96	0	3	0	0.21
467803--467947	31	4.7	31	85	10	190	25	31	18	24	1.98
467803--467974	62	2.8	61	81	10	201	25	31	18	24	1.97
467951--468223	34	7.9	34	86	7	363	20	33	12	34	1.89
467951--468223	70	4.0	68	90	5	399	20	33	12	34	1.89
468230--468321	32	2.8	32	92	7	159	29	35	19	15	1.92
468230--468322	33	2.9	32	93	6	161	29	36	19	15	1.92
468327--468787	49	9.5	49	84	8	586	24	25	17	32	1.97
468327--468854	92	5.3	101	91	5	732	24	25	17	33	1.96
468701--469084	67	6.7	55	72	14	255	24	23	14	37	1.92
468367--468855	242	2.0	235	82	7	586	24	25	17	32	1.96
468866--469024	49	3.1	49	71	10	138	23	23	15	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
468701--469095	171	2.3	171	92	1	673	24	23	14	37	1.92
469835--469901	33	2.0	33	88	0	98	34	11	13	40	1.81
469855--469879	13	1.9	13	100	0	50	36	16	16	32	1.90
469946--469970	13	1.9	13	100	0	50	32	16	16	36	1.90
469979--470103	52	2.4	52	94	2	216	34	18	17	29	1.94
473331--473370	11	3.6	11	83	9	55	0	25	0	75	0.81
473321--473379	22	2.8	21	72	10	57	5	25	0	69	1.09
473686--473727	18	2.3	18	87	4	57	64	7	0	28	1.20
473697--473727	9	3.4	9	100	0	62	61	9	0	29	1.28
478057--478375	79	4.1	77	82	6	302	26	21	13	37	1.91

Tables:   1   2   3   4