genome.fa.s465.2.7.7.80.10.50.1000.4.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: Scaffold465
Parameters: 2 7 7 80 10 50 1000
Length:  646967

Tables:   1   2   3   4   

This is table  4  of  4  ( 472 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
478387--478489	51	2.0	51	83	7	129	29	27	5	37	1.80
480593--480620	14	2.0	14	100	0	56	28	21	7	42	1.79
484557--484633	28	2.8	28	90	4	120	24	19	32	23	1.97
484473--484681	107	2.0	107	83	5	271	30	15	28	26	1.96
484617--484728	51	2.2	51	84	6	147	31	8	27	32	1.87
484668--484959	76	3.8	77	85	4	347	34	12	24	28	1.92
484921--485067	51	2.9	51	83	11	160	36	10	23	29	1.89
487366--487408	20	2.1	21	95	4	79	32	11	23	32	1.90
487438--487462	13	1.9	13	100	0	50	40	8	16	36	1.77
487450--487492	21	2.0	21	100	0	86	27	18	9	44	1.80
487509--487624	13	7.5	13	70	29	70	35	18	12	33	1.89
487517--487666	19	8.8	18	70	27	114	34	17	12	35	1.88
487509--487645	32	4.3	32	99	0	265	35	18	12	34	1.88
487612--487673	19	3.2	19	76	13	63	29	14	14	41	1.85
494108--494155	24	2.0	24	92	4	80	6	31	22	39	1.79
496048--496541	59	8.4	59	83	2	571	29	26	16	27	1.97
496048--496530	178	2.7	175	82	6	596	28	27	16	27	1.97
496061--496528	237	2.0	236	86	1	650	29	26	16	26	1.97
496863--496887	13	1.9	13	100	0	50	32	20	16	32	1.94
501174--501199	13	2.0	13	100	0	52	30	15	15	38	1.88
501238--501314	21	3.8	20	78	3	91	28	15	11	44	1.82
501259--501331	20	3.6	20	81	3	101	31	17	13	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
501238--501331	41	2.3	41	96	0	170	29	17	12	40	1.86
503777--503815	13	3.0	13	96	0	69	35	15	17	30	1.91
510059--510084	13	2.0	13	100	0	52	30	15	15	38	1.88
510144--510216	20	3.6	20	81	3	101	31	17	13	36	1.89
510123--510199	21	3.7	21	77	6	86	28	16	11	42	1.84
510123--510216	41	2.3	41	94	3	163	29	18	12	39	1.88
512081--512130	20	2.5	21	81	15	61	32	8	20	40	1.81
514316--514356	21	2.0	21	85	4	57	58	4	12	24	1.53
514320--514365	20	2.2	21	77	11	51	56	8	10	23	1.61
520164--520226	22	2.9	22	87	0	63	39	4	30	25	1.76
520174--520226	22	2.4	21	90	3	70	39	3	32	24	1.73
520770--520796	13	2.1	13	100	0	54	29	14	14	40	1.86
525139--525582	79	5.6	79	80	6	402	27	25	11	34	1.91
525140--525624	158	3.1	155	77	7	462	28	25	11	35	1.90
530420--530544	52	2.4	52	95	0	223	28	17	18	36	1.94
530420--530564	52	2.8	51	89	4	211	29	17	18	34	1.94
530553--530577	13	1.9	13	100	0	50	36	16	16	32	1.90
530618--530687	33	2.1	33	89	0	104	40	14	11	34	1.82
530643--530667	13	1.9	13	100	0	50	32	16	16	36	1.90
532398--532736	155	2.2	155	81	3	405	40	20	16	23	1.91
533050--533475	164	2.6	162	89	4	630	41	13	12	31	1.83
535797--535837	19	2.1	20	86	4	57	63	7	2	26	1.33
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
535784--535837	20	2.7	19	80	11	56	62	11	1	24	1.37
535888--536707	327	2.5	332	82	6	967	52	7	10	29	1.63
535898--536709	165	4.9	161	78	7	771	52	6	10	29	1.62
538020--538716	44	15.9	44	72	7	236	39	15	23	21	1.91
538024--538716	88	7.9	87	73	6	414	39	15	23	21	1.91
538078--538401	133	2.5	132	86	2	418	39	15	23	21	1.91
538215--538616	219	1.8	219	90	1	644	39	15	24	20	1.92
538339--538715	131	2.9	130	81	2	378	39	16	23	19	1.92
538193--538671	219	2.2	217	83	4	629	40	16	23	20	1.91
538710--538861	48	3.2	48	85	1	218	40	19	21	18	1.91
538894--538973	35	2.3	35	84	2	99	42	11	22	23	1.86
539344--539386	21	2.0	21	86	8	61	53	9	9	27	1.63
545729--545770	20	2.0	21	90	4	68	40	9	19	30	1.83
547535--547569	17	2.1	17	94	0	61	45	14	8	31	1.75
547673--547717	20	2.2	20	88	0	63	51	4	22	22	1.66
547683--547720	20	1.9	20	100	0	76	50	5	21	23	1.69
548426--548465	20	2.0	20	90	5	62	40	22	15	22	1.91
549383--549659	91	3.0	91	89	0	410	28	16	26	28	1.97
550084--550136	21	2.5	21	81	0	70	33	9	15	41	1.79
559596--559635	13	3.1	13	77	0	53	30	12	17	40	1.86
561093--561159	33	2.0	33	94	0	116	25	31	16	26	1.96
562084--562108	13	1.9	13	100	0	50	36	16	16	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
562095--562151	20	2.9	20	81	2	71	40	14	14	31	1.85
565568--565608	20	2.0	20	90	0	64	39	9	12	39	1.76
565571--565615	19	2.3	20	84	3	56	42	11	11	35	1.76
565709--565764	21	2.7	21	75	2	60	39	25	1	33	1.66
568179--568243	20	3.6	19	65	26	52	33	15	13	36	1.87
568234--568270	20	1.9	19	89	10	58	40	13	10	35	1.80
569672--569805	50	2.6	51	88	1	189	28	16	14	41	1.87
579368--579407	13	3.1	13	81	0	53	32	10	15	42	1.79
586809--586842	18	1.9	18	88	5	52	5	14	0	79	0.91
587181--587219	15	2.6	14	80	11	51	0	20	0	79	0.73
590157--590684	155	3.4	153	79	5	546	38	20	17	24	1.92
590995--591585	165	3.7	158	88	4	801	41	12	12	33	1.80
592527--592568	22	2.0	22	85	4	59	2	16	0	80	0.81
592519--592564	19	2.5	18	80	16	58	2	19	0	78	0.86
593198--593974	162	4.9	163	79	11	842	50	6	12	30	1.66
593488--593758	143	1.9	144	88	3	413	51	5	9	32	1.59
593655--593974	167	1.9	165	85	3	446	49	7	12	30	1.67
595989--596086	33	3.0	32	89	8	144	37	14	17	30	1.89
596009--596066	13	4.9	13	68	23	56	37	13	17	31	1.89
596022--596087	20	3.7	19	73	26	72	39	12	16	31	1.85
600754--600784	16	1.9	16	93	0	53	54	0	9	35	1.33
606116--606161	20	2.3	20	88	0	65	41	2	10	45	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
606839--606916	33	2.4	33	84	2	113	46	8	15	29	1.76
607958--608867	295	3.0	299	90	3	1387	26	21	12	39	1.89
616209--616234	2	13.0	2	100	0	52	50	0	0	50	1.00
616069--616339	148	1.8	148	91	1	445	24	15	8	51	1.71
617350--617375	13	2.0	13	100	0	52	38	15	15	30	1.88
617331--617396	33	2.0	34	87	3	98	42	16	13	27	1.86
623279--623303	13	1.9	13	100	0	50	24	0	28	48	1.52
623583--623628	21	2.2	20	81	11	58	32	19	4	43	1.71
626036--626061	13	2.0	13	100	0	52	38	15	15	30	1.88
626017--626082	33	2.0	34	87	3	98	42	16	13	27	1.86
627269--627313	21	2.1	21	84	8	56	33	0	11	55	1.35
627280--627319	21	2.0	21	85	5	55	30	2	10	57	1.45
627530--627608	20	4.0	20	77	11	81	36	3	12	46	1.60
627084--627610	259	2.0	261	78	5	548	33	5	14	47	1.66
627694--627734	19	2.1	19	86	4	55	46	2	4	46	1.37
628319--628344	2	13.0	2	100	0	52	50	0	0	50	1.00
629569--629621	23	2.3	23	77	6	54	54	7	1	35	1.40
630102--630142	2	20.5	2	94	0	73	51	0	0	48	1.00
631780--631847	29	2.3	29	80	14	77	54	0	0	45	0.99
631801--631848	14	3.3	15	81	13	57	60	0	0	39	0.97
635441--635479	13	3.0	13	92	0	69	30	20	17	30	1.96
637559--637589	15	2.1	15	93	0	53	12	22	16	48	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
641664--641689	13	2.0	13	100	0	52	30	15	15	38	1.88
645101--645143	23	1.9	23	85	4	61	41	0	9	48	1.35

Tables:   1   2   3   4

The End!